SILENT_MODE
BLOCK_FILE jp_s3ohA1F.concise.blc
MAX_NSEQ 134
MAX_INPUT_LEN 136
OUTPUT_FILE jp_s3ohA1F.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 180 123   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 124 180 133 H SPACE
SUB_CHARS 1 124 180 133 E SPACE
SUB_CHARS 1 124 180 133 - SPACE
HELIX 5 127 21
COLOUR_TEXT_REGION 5 127 21 127 50
HELIX 23 127 45
COLOUR_TEXT_REGION 23 127 45 127 50
HELIX 50 127 87
COLOUR_TEXT_REGION 50 127 87 127 50
HELIX 92 127 135
COLOUR_TEXT_REGION 92 127 135 127 50
HELIX 141 127 177
COLOUR_TEXT_REGION 141 127 177 127 50
HELIX 5 132 22
COLOUR_TEXT_REGION 5 132 22 132 50
HELIX 24 132 45
COLOUR_TEXT_REGION 24 132 45 132 50
HELIX 50 132 87
COLOUR_TEXT_REGION 50 132 87 132 50
HELIX 92 132 135
COLOUR_TEXT_REGION 92 132 135 132 50
HELIX 141 132 177
COLOUR_TEXT_REGION 141 132 177 132 50
HELIX 4 133 20
COLOUR_TEXT_REGION 4 133 20 133 50
HELIX 23 133 45
COLOUR_TEXT_REGION 23 133 45 133 50
HELIX 50 133 87
COLOUR_TEXT_REGION 50 133 87 133 50
HELIX 92 133 134
COLOUR_TEXT_REGION 92 133 134 133 50
HELIX 142 133 177
COLOUR_TEXT_REGION 142 133 177 133 50