SILENT_MODE BLOCK_FILE jp_qBLSfmW.concise.blc MAX_NSEQ 424 MAX_INPUT_LEN 426 OUTPUT_FILE jp_qBLSfmW.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 79 413 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 414 79 423 H SPACE SUB_CHARS 1 414 79 423 E SPACE SUB_CHARS 1 414 79 423 - SPACE STRAND 21 417 29 COLOUR_TEXT_REGION 21 417 29 417 51 STRAND 34 417 41 COLOUR_TEXT_REGION 34 417 41 417 51 STRAND 48 417 53 COLOUR_TEXT_REGION 48 417 53 417 51 STRAND 71 417 75 COLOUR_TEXT_REGION 71 417 75 417 51 HELIX 3 417 12 COLOUR_TEXT_REGION 3 417 12 417 50 HELIX 15 417 18 COLOUR_TEXT_REGION 15 417 18 417 50 HELIX 58 417 67 COLOUR_TEXT_REGION 58 417 67 417 50 STRAND 21 422 29 COLOUR_TEXT_REGION 21 422 29 422 51 STRAND 34 422 41 COLOUR_TEXT_REGION 34 422 41 422 51 STRAND 48 422 53 COLOUR_TEXT_REGION 48 422 53 422 51 STRAND 71 422 76 COLOUR_TEXT_REGION 71 422 76 422 51 HELIX 3 422 12 COLOUR_TEXT_REGION 3 422 12 422 50 HELIX 15 422 18 COLOUR_TEXT_REGION 15 422 18 422 50 HELIX 58 422 67 COLOUR_TEXT_REGION 58 422 67 422 50 STRAND 22 423 28 COLOUR_TEXT_REGION 22 423 28 423 51 STRAND 34 423 41 COLOUR_TEXT_REGION 34 423 41 423 51 STRAND 48 423 53 COLOUR_TEXT_REGION 48 423 53 423 51 STRAND 71 423 75 COLOUR_TEXT_REGION 71 423 75 423 51 HELIX 3 423 12 COLOUR_TEXT_REGION 3 423 12 423 50 HELIX 16 423 18 COLOUR_TEXT_REGION 16 423 18 423 50 HELIX 57 423 67 COLOUR_TEXT_REGION 57 423 67 423 50