SILENT_MODE BLOCK_FILE jp_FpF01Bq.concise.blc MAX_NSEQ 344 MAX_INPUT_LEN 346 OUTPUT_FILE jp_FpF01Bq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 333 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 334 101 343 H SPACE SUB_CHARS 1 334 101 343 E SPACE SUB_CHARS 1 334 101 343 - SPACE STRAND 6 337 15 COLOUR_TEXT_REGION 6 337 15 337 51 STRAND 25 337 33 COLOUR_TEXT_REGION 25 337 33 337 51 STRAND 78 337 80 COLOUR_TEXT_REGION 78 337 80 337 51 STRAND 85 337 88 COLOUR_TEXT_REGION 85 337 88 337 51 STRAND 93 337 95 COLOUR_TEXT_REGION 93 337 95 337 51 HELIX 42 337 52 COLOUR_TEXT_REGION 42 337 52 337 50 STRAND 6 342 15 COLOUR_TEXT_REGION 6 342 15 342 51 STRAND 25 342 26 COLOUR_TEXT_REGION 25 342 26 342 51 STRAND 31 342 34 COLOUR_TEXT_REGION 31 342 34 342 51 STRAND 70 342 71 COLOUR_TEXT_REGION 70 342 71 342 51 STRAND 78 342 80 COLOUR_TEXT_REGION 78 342 80 342 51 STRAND 85 342 88 COLOUR_TEXT_REGION 85 342 88 342 51 STRAND 93 342 96 COLOUR_TEXT_REGION 93 342 96 342 51 HELIX 43 342 53 COLOUR_TEXT_REGION 43 342 53 342 50 STRAND 5 343 15 COLOUR_TEXT_REGION 5 343 15 343 51 STRAND 25 343 31 COLOUR_TEXT_REGION 25 343 31 343 51 STRAND 78 343 81 COLOUR_TEXT_REGION 78 343 81 343 51 STRAND 86 343 88 COLOUR_TEXT_REGION 86 343 88 343 51 STRAND 93 343 93 COLOUR_TEXT_REGION 93 343 93 343 51 HELIX 41 343 51 COLOUR_TEXT_REGION 41 343 51 343 50