QUERY           : MLILSPNFEYEEITRSFLSNMLAFTRGHFTGDISHFSPIVLAEMEKDPNWLEEAAGGMQGVIVQSLLEDENFSSVEQLKGELARLIRLYFALAKDNLTENQESLYVDLFDKFTFLLLCSDEFIMYLDS : QUERY 
UniRef90_R2XNY1 : ----APNFQYTKEIGQVLMNTLSFSVALQTKDYSTFSPEVLEQMEREPEWLYDITNWLQVTIVNSLLQSDNYDSIDEIVREFNCLLSLYDVARQREFTPSENHLFLNIHDKFLALLLTDEELITYL-- : UniRef90_R2XNY1
UniRef90_H8LB81 : ----APNFQYTDEMDRFLMNTLAFSVGLVTEDYSTFDPEVLKIMEEEPDWLQESVAWCQSLVVGSLVDSGNYDDTGELMDEFNCLLNLYDRARQRELTSNEDNLFLNIHDKFLALLLTDDELITNL-- : UniRef90_H8LB81
UniRef90_R2SML5 : ----KPNLAYVDMMERFLMNVVAFSVALVTKDYSTFSPEVLEMMESNPEWLKETVAWGQQMLAQSVVDGENYLTNEEMAEDLSGLIVLYNTATQRELTDHEDALFTNLHDRFLTLLLVDDELIKHF-- : UniRef90_R2SML5

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121----- :
OrigSeq         : MLILSPNFEYEEITRSFLSNMLAFTRGHFTGDISHFSPIVLAEMEKDPNWLEEAAGGMQGVIVQSLLEDENFSSVEQLKGELARLIRLYFALAKDNLTENQESLYVDLFDKFTFLLLCSDEFIMYLDS : OrigSeq

Jnet            : --E-----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH---HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH----------EHHHHHHHHHHHH--HHHHHH--- : Jnet
jhmm            : --------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH--HHHHHHH-- : jhmm
jpssm           : -EEE----HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHHHHHHHEE-------HHHHHHHHHHHHHHHHHHHHH---------EEEEHHHHHHHHHH--HHHHHH--- : jpssm

Lupas 14        : --------------------------------------------------------------------------CCCCCCCCCCCCCC---------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------CCCCCCCCCCCCCCCCCCCCC--------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------cccccccccccccccccccccccccccc-------------------------- : Lupas 28

Jnet_25         : --BB-BBB-B--BB--BBBBBBBBBBBBBB--B--B-B-BB--B---B-BB--BB-BB-BBBBBBBB----B--B--BB--B-BBB-BB--B----B------BBB-BBB-BBBBBBB---BB--B-- : Jnet_25
Jnet_5          : -----------------B--BB-B---------------BB---------B------B---BB--B-----------B---B--BB-B---------------B---B---BBBBBBB---B------ : Jnet_5
Jnet_0          : -------------------------------------------------------------B----------------------B------------------------------------------- : Jnet_0
Jnet Rel        : 74105875278999999999999999875357887627899987138707899988886553213327887641799999999989999998751678887652024356666532225577763299 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.