SILENT_MODE BLOCK_FILE jp_Q_2V58b.concise.blc MAX_NSEQ 604 MAX_INPUT_LEN 606 OUTPUT_FILE jp_Q_2V58b.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 84 593 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 594 84 603 H SPACE SUB_CHARS 1 594 84 603 E SPACE SUB_CHARS 1 594 84 603 - SPACE STRAND 5 597 11 COLOUR_TEXT_REGION 5 597 11 597 51 STRAND 16 597 22 COLOUR_TEXT_REGION 16 597 22 597 51 STRAND 25 597 32 COLOUR_TEXT_REGION 25 597 32 597 51 STRAND 53 597 56 COLOUR_TEXT_REGION 53 597 56 597 51 STRAND 61 597 64 COLOUR_TEXT_REGION 61 597 64 597 51 HELIX 33 597 35 COLOUR_TEXT_REGION 33 597 35 597 50 HELIX 41 597 44 COLOUR_TEXT_REGION 41 597 44 597 50 HELIX 47 597 50 COLOUR_TEXT_REGION 47 597 50 597 50 HELIX 71 597 81 COLOUR_TEXT_REGION 71 597 81 597 50 STRAND 5 602 11 COLOUR_TEXT_REGION 5 602 11 602 51 STRAND 16 602 22 COLOUR_TEXT_REGION 16 602 22 602 51 STRAND 25 602 32 COLOUR_TEXT_REGION 25 602 32 602 51 STRAND 53 602 56 COLOUR_TEXT_REGION 53 602 56 602 51 STRAND 61 602 63 COLOUR_TEXT_REGION 61 602 63 602 51 HELIX 35 602 35 COLOUR_TEXT_REGION 35 602 35 602 50 HELIX 41 602 45 COLOUR_TEXT_REGION 41 602 45 602 50 HELIX 47 602 50 COLOUR_TEXT_REGION 47 602 50 602 50 HELIX 71 602 81 COLOUR_TEXT_REGION 71 602 81 602 50 STRAND 5 603 11 COLOUR_TEXT_REGION 5 603 11 603 51 STRAND 16 603 21 COLOUR_TEXT_REGION 16 603 21 603 51 STRAND 26 603 31 COLOUR_TEXT_REGION 26 603 31 603 51 STRAND 52 603 56 COLOUR_TEXT_REGION 52 603 56 603 51 STRAND 61 603 64 COLOUR_TEXT_REGION 61 603 64 603 51 HELIX 32 603 35 COLOUR_TEXT_REGION 32 603 35 603 50 HELIX 43 603 43 COLOUR_TEXT_REGION 43 603 43 603 50 HELIX 47 603 50 COLOUR_TEXT_REGION 47 603 50 603 50 HELIX 71 603 81 COLOUR_TEXT_REGION 71 603 81 603 50