SILENT_MODE
BLOCK_FILE jp_GMFtIQ9.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_GMFtIQ9.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 37   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 38 121 47 H SPACE
SUB_CHARS 1 38 121 47 E SPACE
SUB_CHARS 1 38 121 47 - SPACE
STRAND 3 41 6
COLOUR_TEXT_REGION 3 41 6 41 51
STRAND 19 41 28
COLOUR_TEXT_REGION 19 41 28 41 51
STRAND 33 41 39
COLOUR_TEXT_REGION 33 41 39 41 51
STRAND 49 41 55
COLOUR_TEXT_REGION 49 41 55 41 51
STRAND 61 41 66
COLOUR_TEXT_REGION 61 41 66 41 51
STRAND 73 41 73
COLOUR_TEXT_REGION 73 41 73 41 51
STRAND 79 41 85
COLOUR_TEXT_REGION 79 41 85 41 51
STRAND 91 41 97
COLOUR_TEXT_REGION 91 41 97 41 51
STRAND 102 41 102
COLOUR_TEXT_REGION 102 41 102 41 51
STRAND 107 41 118
COLOUR_TEXT_REGION 107 41 118 41 51
STRAND 2 46 6
COLOUR_TEXT_REGION 2 46 6 46 51
STRAND 19 46 28
COLOUR_TEXT_REGION 19 46 28 46 51
STRAND 33 46 39
COLOUR_TEXT_REGION 33 46 39 46 51
STRAND 50 46 54
COLOUR_TEXT_REGION 50 46 54 46 51
STRAND 61 46 66
COLOUR_TEXT_REGION 61 46 66 46 51
STRAND 73 46 73
COLOUR_TEXT_REGION 73 46 73 46 51
STRAND 79 46 85
COLOUR_TEXT_REGION 79 46 85 46 51
STRAND 91 46 97
COLOUR_TEXT_REGION 91 46 97 46 51
STRAND 107 46 118
COLOUR_TEXT_REGION 107 46 118 46 51
STRAND 3 47 6
COLOUR_TEXT_REGION 3 47 6 47 51
STRAND 19 47 28
COLOUR_TEXT_REGION 19 47 28 47 51
STRAND 33 47 39
COLOUR_TEXT_REGION 33 47 39 47 51
STRAND 49 47 55
COLOUR_TEXT_REGION 49 47 55 47 51
STRAND 61 47 66
COLOUR_TEXT_REGION 61 47 66 47 51
STRAND 73 47 73
COLOUR_TEXT_REGION 73 47 73 47 51
STRAND 80 47 85
COLOUR_TEXT_REGION 80 47 85 47 51
STRAND 91 47 97
COLOUR_TEXT_REGION 91 47 97 47 51
STRAND 101 47 102
COLOUR_TEXT_REGION 101 47 102 47 51
STRAND 107 47 118
COLOUR_TEXT_REGION 107 47 118 47 51