QUERY : AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE : QUERY
UniRef90_Q8KWG5 : AEINLVSHRNTESQLRDGMKLATGRMTCRETHTGFHVWMNARQDGGRPEHYIVQNSKGQHELRVRIGGNGWISSFGEAQRGIFRLGKEEQAIFDVIVDGDQKVIPGEYMLSISGECIV--- : UniRef90_Q8KWG5
UniRef90_T6MQH1 : AEITLVSHRSTGSQLRDGMILATGRIICREIHTGFQIWMNDRQEGGHPRHYVIQNKGNQGELRVRIGGNSWFSSLDEEWQGWIRLGKEKQVNFDVIVDGEQYIPPGKYIFSVSGKCMASE- : UniRef90_T6MQH1
UniRef90_P46006 : AEITLISHKTLGSQLRDGMKLATGRIACREPHDGFHIWINASQ-NGKVGHYIVQNRETKHELKVKIGGGGWSSSLIEGQRGVYRQGEEKQAIFDIMSDGNQYSAPGEYIFSVSGECLISR- : UniRef90_P46006
UniRef90_Q9X4L4 : -EISLEGHRNMGEQLFDGDILATGRIICRERHTGFHIQMNARQVEGRPGHYIVQGKDTQSKLWVRLGREGWTSPTGGGQQGIVRSGQEEQVIFDVMADGNQWAKPGEYIFSVSGKCLTSWE : UniRef90_Q9X4L4
UniRef90_G2B334 : -ELNIVPHKGMTGELRDGMKIATGRIICREAHTGFHIRINARQQESRPGHYIIQGRDSRHELRVRIAGEGWSPSVTGGQEGMVSYGQREQGVFDVVADGSQRVEADEYIYSVTGECL---- : UniRef90_G2B334
UniRef90_UPI0003EE1207 : AELELSSLNRMGGNLSDGTRIATGQILCRDSHSGFHVWMNAQKAGYQPEHYIIRGQNSQNEIRVRLTGDRWSPSVDKGQNGVIRISADERAIFDILVDGRQNVEADRYILSLHGVCL---- : UniRef90_UPI0003EE1207
UniRef90_D8EF36 : AELALYPQHNKGGNLVDGVRIAKGRIVCRDAHSGFRIWMNAQKAGERSEYIIKGRTKNQHEIRVRLGGDGWSPSVLKEQYGMARSGTEEGAIFDVLLDGDQYVAPDEYVFSVRGLCL---- : UniRef90_D8EF36
UniRef90_B3V224 : ADITLMNHKYMGNLLHDGVKLATGRIICQDTHSGFRVWINARQEGGGAGKYIVQSTEGQHNLRIRIGGNGWSSFVEKGIQGVFNTIKEDASIFYIEVDGNQQVHPGKYLFSVSGECYI--- : UniRef90_B3V224
UniRef90_Q9XDG6 : AELSLDVRKAMGSELRDGERIATGRIICREAHTGFHVWMNGREDEGRPGHLLIQGKDSRNEIRARVEGEGWSAIT-EGEHRLVKAGEEEQAVFDVVSDGRQRAGADEYVLSVSGSCVDSR- : UniRef90_Q9XDG6
UniRef90_Q9XDG7 : VELSLNTSDGRSGELKDGTKVATGRIICRGTYTSFHIWMNSRQMGNIPGHYIILGRDSHNEMRVRLDGAGWLPSVS-DGQGMVSTGIPEQHTFDVVIDGNQLLGPDEYILSVSGEC----- : UniRef90_Q9XDG7
UniRef90_G4C9M1 : VDITLNSALNLNSQIRDGQLIGYGRISTQQAHSGYQVWLNAERNGESPDRYVLTGKSNQHKLYVIIGQNGWVP-DNKGGEGIIKRTREMQEQFDIVANGHQSVPVDTYVITVQGRYFEP-- : UniRef90_G4C9M1
UniRef90_A0A028K619 : ---------FRAGHEPDGMVLAQGWVTYHGSHSGFRVWSDEQKAGDSPGVLLLSGQDTHHHLQVRLEGEEWQP-DTASGHGVILRTAADNASFRVVVDGDQEVPADTWTLDFKACALVHEE : UniRef90_A0A028K619
UniRef90_A0A034T3D1 : VDITLNSVSNLSSQVRDGQMISRGRITGQQIRQGYQVWLDAERNGDAPNRYVLTGKNSQHKLYVIIGQEGWVP-DTKDGLGIIKYTRKGQEQFDIVANGNQSVPIDTYVITIQGRYL---- : UniRef90_A0A034T3D1
UniRef90_UPI00041592B5 : VDITLNSVANLSPQLRDGQRIGQGQIQTQQAHRGFQVWLEAPRSSEAPNRYILMGKNNQHKLFVIIGQAGWQP-DSQGGLGIIKLTRDRQARFDIVVNGGQYAPIDTYTVTVQGRYLEP-- : UniRef90_UPI00041592B5
UniRef90_UPI000478D208 : -----MKHGLQAHVVKDGMRLGQGTLVSHEAHAGFRLWSEVQTSSFPTGHFVLSGKNDAHKLRIRLVPRGLTAEGSPGSSEMVLNTKDDRVVFDVIADGEQRVEADHYRLDISGTALPP-- : UniRef90_UPI000478D208
UniRef90_C4UJG7 : -QLNLMNNGLLSGHVNGERRIGQGRIQYYGNHLGFQVWSDANKSGAQPNSYVLLGKNNSNKLRVRIEKKDWQP-DHEGGKGIILHYGGETATFDVVIDGDQTVVADHYSLALNAAVLLP-- : UniRef90_C4UJG7
UniRef90_UPI0002E0A4F1 : --LQLRAAPGLAGPVRDGTLLIAGRVSSNAPHSGFRLRCEAEAEPGHPGRCTLAGRDPGHRLRVRLSGPGWQAGAAGDGTMMV-YTTDGSTAFRLEADGDQHVEADTWTVALSASVM---- : UniRef90_UPI0002E0A4F1
UniRef90_D4BUN4 : -----SVSGLSAGSLGDGRLIAQGRVIYSEPHQGFRVWSEGTQVQGQVHRYQLMSARG-HPLNIRLAGKDWQP-DAQSGKGIVSQTGELSQPFDVEVDGAQTLPMDTWVLRFQAVVLQP-- : UniRef90_D4BUN4
UniRef90_L0MML6 : -DLKLSMQPINERQLSDGQIIGSGQVTYPGEHRGFQVWLTAEKQNGAAERYILRGSNNAHRMFVRLERPEWHPDDI-GKQGIILYTGEARADFNIVIDGDQAVAADNYAV----------- : UniRef90_L0MML6
UniRef90_L3G4Z0 : AEINLETRAFSGSYLYDGDIIATGSVFCDDGEVSRVVLLNIKPVNGQSNVYHLQGRNPSNELTVRIEGNGWSPSD-KVGNGIYKKLINKQDQFYVVANGRQHVRADIYTIRASSIC----- : UniRef90_L3G4Z0
UniRef90_E0LZA3 : -----MNHGLQAGAVRDGTKLGRGTLVSYDIHTGFQLRSEQAVSGQQGGRYVLTGQNPAHQLRVRLVPQQQVVTEMADMQVITVHTGEDRMVFDILADGDQRVKADTYSLNIAGQVVTQ-- : UniRef90_E0LZA3
UniRef90_U4W527 : --LHLTATPGLAGPVRDGTLLMRGRVSSNAPHGGFRLWCAAYAAGGSSARCVLTGQRHANTLRVRLSGEGWLPGPPPEG-GMITVDAERSVAFRIEADGDQNAAADTWAVALSAA------ : UniRef90_U4W527
UniRef90_Q48BA6 : ------AAGLRAGHIRNGALVMIGQVNDPGIHTGFRIQQELQADTGRPQVLRLHGRDSTHILQVRLEGQGWQP-DPRDVAGQVTYVTDNSVQFRLVADGDQTVAADSWEVAINAIVI---- : UniRef90_Q48BA6
UniRef90_B2Q5R1 : --LSLNIRPLKSGVITDGTLLAKGEISDNGDYCGFKIWSDAPLNNGRSQRYRLFSSGKQ--LNIRLSAPELI-HDELNKISIIK-SKNKTELFEIVSDGTQKISSASWEIILNGSVL---- : UniRef90_B2Q5R1
UniRef90_F9I5A8 : AEITLISHKTLESQLRDGMKLATGRIACREPHNGFYIWINASQ-NGKVGHYIVQNRETKHELKVKIGG----------------------------------------------------- : UniRef90_F9I5A8
UniRef90_U4W0F8 : -----------SGIFPDGTTLAVIYLSGMNQKCAVNVWSPSAQNETTPGSYTLYDRPGGNRLRVRLVGEGWQP-DIQFGTGVMLNDPSGFATLKLITNGEQYIESHTWPINISVQC----- : UniRef90_U4W0F8
UniRef90_B5R1L8 : -------------------IIGTGHLFNRE---GKKILISSEKIKNTPGAYIIRGQNNAHKLRIRIGGEDWQP--DNSGIGMVSHS-DFTNEFNIYYFGNGDIPVDTYLISI--------- : UniRef90_B5R1L8
UniRef90_B3IA45 : -EISINMDNNQSTQ--NNHVLGTGYVKS-DGKSYVIVSSNAEKVPGQQATYIFRGKNNQNRIAIRLGGEGWHP--DKTGLGISSR-INMLSKFELYFSNNYRVNPDVYLI----------- : UniRef90_B3IA45
UniRef90_S5T0Z8 : ----------------------------------------------------LTGKSNQHKLYVIIGQNGWVP-DNKGGEGIIKRTREMQEQFDIVANGHQSVPVDTYVITVQGRYFEP-- : UniRef90_S5T0Z8
UniRef90_X2MX62 : --------------------IGTGHLFNRE---GKKILISSEKIKNTPGAYIIRGQNNAHKLRIRIGGEDWQP--DNSGIGMV-------------------------------------- : UniRef90_X2MX62
UniRef90_G9UCR8 : --------GLMAGREHDGMNIAKLTVSSTSIKQ-FGVRVSGTLMNGSASAWEINGRNSGKPIIVGLASNAATGKGPKMWNGETWNTFNTNTPVNIVTIGDQDIPPDTYPMTVDVVGYQP-- : UniRef90_G9UCR8
UniRef90_G5NPB4 : --VSLEQVPGLAGRGHDGMDIAKLTVSSASIKE-FGVRGVASPILGSAGHWKITGRNSGKSIVVGFSPNIATARGPEMWNGETWSTFDTNTPVNIITIGDQDIPPDTYPLTL--------- : UniRef90_G5NPB4
UniRef90_A0A028K442 : --------GLQAGPIKANTVIATVTVTSPTVKTYF-----SAKNIVNADTWDIYGKNSGKPLRVYVNADNGSPVTTIGGHQWFVYNINQR--LDVKVAGDRNIPADSYPLNINIAAYQ--- : UniRef90_A0A028K442
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111------- :
OrigSeq : AELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE : OrigSeq
Jnet : --EEEE------------EEEEEEEEEE----EEEEEEE---------EEEEEEE-----EEEEEE------E-----EEEEEEE-----EEEEEEE----E----EEEEEEEEEEEE--- : Jnet
jhmm : -EEEEE------------EEEEEEEEEE----EEEEEEE----------EEEEE------EEEEEE------E-----EEEEEEE-----EEEEEEE---------EEEEEEEEEEEE--- : jhmm
jpssm : --EEEE------------EEEEEEEEEE----EEEEEEE---------EEEEEEE-----EEEEEE------E------EEEEEE-----EEEEEEE---EE----EEEEEEEEEEEE--- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : B-B-B----B----B--BB-BB-BBBBB----BBB-BBB-B------B-BBBBBB------BBBBB----BB------B-BBBB------B-BBBBBB--B-B-B--BBBBBBB-BB---- : Jnet_25
Jnet_5 : --------------------BB-B-B-------BB-B-B-----------B-B--------B-B-B----------------B---------B-BBB-----B------B-B-B-B----- : Jnet_5
Jnet_0 : ---------------------B------------------------------------------------------------------------B-B------------B-B-B------- : Jnet_0
Jnet Rel : 8068853677776777753788899996488707998743411577741889981488855889854777631367770589986488855899984475213775589988768973389 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.