SILENT_MODE
BLOCK_FILE jp_rZ09uxH.concise.blc
MAX_NSEQ 958
MAX_INPUT_LEN 960
OUTPUT_FILE jp_rZ09uxH.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 186 947   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 948 186 957 H SPACE
SUB_CHARS 1 948 186 957 E SPACE
SUB_CHARS 1 948 186 957 - SPACE
STRAND 2 951 8
COLOUR_TEXT_REGION 2 951 8 951 51
STRAND 20 951 25
COLOUR_TEXT_REGION 20 951 25 951 51
STRAND 30 951 37
COLOUR_TEXT_REGION 30 951 37 951 51
STRAND 44 951 45
COLOUR_TEXT_REGION 44 951 45 951 51
STRAND 69 951 72
COLOUR_TEXT_REGION 69 951 72 951 51
STRAND 86 951 90
COLOUR_TEXT_REGION 86 951 90 951 51
STRAND 122 951 124
COLOUR_TEXT_REGION 122 951 124 951 51
STRAND 145 951 148
COLOUR_TEXT_REGION 145 951 148 951 51
STRAND 162 951 167
COLOUR_TEXT_REGION 162 951 167 951 51
STRAND 179 951 184
COLOUR_TEXT_REGION 179 951 184 951 51
HELIX 110 951 118
COLOUR_TEXT_REGION 110 951 118 951 50
HELIX 136 951 140
COLOUR_TEXT_REGION 136 951 140 951 50
HELIX 149 951 154
COLOUR_TEXT_REGION 149 951 154 951 50
STRAND 3 956 8
COLOUR_TEXT_REGION 3 956 8 956 51
STRAND 20 956 25
COLOUR_TEXT_REGION 20 956 25 956 51
STRAND 30 956 37
COLOUR_TEXT_REGION 30 956 37 956 51
STRAND 69 956 73
COLOUR_TEXT_REGION 69 956 73 956 51
STRAND 86 956 90
COLOUR_TEXT_REGION 86 956 90 956 51
STRAND 122 956 125
COLOUR_TEXT_REGION 122 956 125 956 51
STRAND 145 956 148
COLOUR_TEXT_REGION 145 956 148 956 51
STRAND 162 956 167
COLOUR_TEXT_REGION 162 956 167 956 51
STRAND 180 956 185
COLOUR_TEXT_REGION 180 956 185 956 51
HELIX 74 956 76
COLOUR_TEXT_REGION 74 956 76 956 50
HELIX 111 956 117
COLOUR_TEXT_REGION 111 956 117 956 50
HELIX 136 956 140
COLOUR_TEXT_REGION 136 956 140 956 50
HELIX 149 956 154
COLOUR_TEXT_REGION 149 956 154 956 50
STRAND 2 957 8
COLOUR_TEXT_REGION 2 957 8 957 51
STRAND 20 957 25
COLOUR_TEXT_REGION 20 957 25 957 51
STRAND 30 957 37
COLOUR_TEXT_REGION 30 957 37 957 51
STRAND 43 957 46
COLOUR_TEXT_REGION 43 957 46 957 51
STRAND 70 957 72
COLOUR_TEXT_REGION 70 957 72 957 51
STRAND 86 957 90
COLOUR_TEXT_REGION 86 957 90 957 51
STRAND 145 957 147
COLOUR_TEXT_REGION 145 957 147 957 51
STRAND 162 957 167
COLOUR_TEXT_REGION 162 957 167 957 51
STRAND 179 957 184
COLOUR_TEXT_REGION 179 957 184 957 51
HELIX 109 957 123
COLOUR_TEXT_REGION 109 957 123 957 50
HELIX 132 957 139
COLOUR_TEXT_REGION 132 957 139 957 50
HELIX 148 957 152
COLOUR_TEXT_REGION 148 957 152 957 50