SILENT_MODE BLOCK_FILE jp_f1Bm2mX.concise.blc MAX_NSEQ 122 MAX_INPUT_LEN 124 OUTPUT_FILE jp_f1Bm2mX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 101 111 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 112 101 121 H SPACE SUB_CHARS 1 112 101 121 E SPACE SUB_CHARS 1 112 101 121 - SPACE STRAND 5 115 8 COLOUR_TEXT_REGION 5 115 8 115 51 STRAND 18 115 23 COLOUR_TEXT_REGION 18 115 23 115 51 STRAND 28 115 32 COLOUR_TEXT_REGION 28 115 32 115 51 STRAND 48 115 48 COLOUR_TEXT_REGION 48 115 48 115 51 STRAND 57 115 62 COLOUR_TEXT_REGION 57 115 62 115 51 STRAND 67 115 73 COLOUR_TEXT_REGION 67 115 73 115 51 STRAND 80 115 88 COLOUR_TEXT_REGION 80 115 88 115 51 HELIX 35 115 39 COLOUR_TEXT_REGION 35 115 39 115 50 STRAND 5 120 9 COLOUR_TEXT_REGION 5 120 9 120 51 STRAND 18 120 22 COLOUR_TEXT_REGION 18 120 22 120 51 STRAND 28 120 31 COLOUR_TEXT_REGION 28 120 31 120 51 STRAND 57 120 62 COLOUR_TEXT_REGION 57 120 62 120 51 STRAND 68 120 73 COLOUR_TEXT_REGION 68 120 73 120 51 STRAND 81 120 88 COLOUR_TEXT_REGION 81 120 88 120 51 HELIX 36 120 36 COLOUR_TEXT_REGION 36 120 36 120 50 STRAND 6 121 7 COLOUR_TEXT_REGION 6 121 7 121 51 STRAND 18 121 23 COLOUR_TEXT_REGION 18 121 23 121 51 STRAND 28 121 32 COLOUR_TEXT_REGION 28 121 32 121 51 STRAND 47 121 49 COLOUR_TEXT_REGION 47 121 49 121 51 STRAND 58 121 62 COLOUR_TEXT_REGION 58 121 62 121 51 STRAND 67 121 73 COLOUR_TEXT_REGION 67 121 73 121 51 STRAND 80 121 89 COLOUR_TEXT_REGION 80 121 89 121 51 HELIX 34 121 41 COLOUR_TEXT_REGION 34 121 41 121 50