SILENT_MODE
BLOCK_FILE jp_NE3zBmi.concise.blc
MAX_NSEQ 90
MAX_INPUT_LEN 92
OUTPUT_FILE jp_NE3zBmi.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 81 79   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 80 81 89 H SPACE
SUB_CHARS 1 80 81 89 E SPACE
SUB_CHARS 1 80 81 89 - SPACE
HELIX 3 83 17
COLOUR_TEXT_REGION 3 83 17 83 50
HELIX 25 83 36
COLOUR_TEXT_REGION 25 83 36 83 50
HELIX 42 83 45
COLOUR_TEXT_REGION 42 83 45 83 50
HELIX 50 83 59
COLOUR_TEXT_REGION 50 83 59 83 50
HELIX 65 83 78
COLOUR_TEXT_REGION 65 83 78 83 50
HELIX 3 88 17
COLOUR_TEXT_REGION 3 88 17 88 50
HELIX 25 88 36
COLOUR_TEXT_REGION 25 88 36 88 50
HELIX 42 88 45
COLOUR_TEXT_REGION 42 88 45 88 50
HELIX 50 88 59
COLOUR_TEXT_REGION 50 88 59 88 50
HELIX 65 88 79
COLOUR_TEXT_REGION 65 88 79 88 50
HELIX 3 89 18
COLOUR_TEXT_REGION 3 89 18 89 50
HELIX 25 89 35
COLOUR_TEXT_REGION 25 89 35 89 50
HELIX 42 89 45
COLOUR_TEXT_REGION 42 89 45 89 50
HELIX 50 89 59
COLOUR_TEXT_REGION 50 89 59 89 50
HELIX 65 89 78
COLOUR_TEXT_REGION 65 89 78 89 50