SILENT_MODE BLOCK_FILE jp_vIn5CWA.concise.blc MAX_NSEQ 948 MAX_INPUT_LEN 950 OUTPUT_FILE jp_vIn5CWA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 138 937 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 938 138 947 H SPACE SUB_CHARS 1 938 138 947 E SPACE SUB_CHARS 1 938 138 947 - SPACE STRAND 4 941 5 COLOUR_TEXT_REGION 4 941 5 941 51 STRAND 8 941 13 COLOUR_TEXT_REGION 8 941 13 941 51 STRAND 18 941 22 COLOUR_TEXT_REGION 18 941 22 941 51 STRAND 44 941 49 COLOUR_TEXT_REGION 44 941 49 941 51 STRAND 71 941 74 COLOUR_TEXT_REGION 71 941 74 941 51 STRAND 103 941 107 COLOUR_TEXT_REGION 103 941 107 941 51 HELIX 26 941 40 COLOUR_TEXT_REGION 26 941 40 941 50 HELIX 58 941 66 COLOUR_TEXT_REGION 58 941 66 941 50 HELIX 83 941 95 COLOUR_TEXT_REGION 83 941 95 941 50 HELIX 115 941 121 COLOUR_TEXT_REGION 115 941 121 941 50 HELIX 125 941 136 COLOUR_TEXT_REGION 125 941 136 941 50 STRAND 3 946 5 COLOUR_TEXT_REGION 3 946 5 946 51 STRAND 8 946 13 COLOUR_TEXT_REGION 8 946 13 946 51 STRAND 18 946 22 COLOUR_TEXT_REGION 18 946 22 946 51 STRAND 45 946 48 COLOUR_TEXT_REGION 45 946 48 946 51 STRAND 71 946 75 COLOUR_TEXT_REGION 71 946 75 946 51 STRAND 103 946 107 COLOUR_TEXT_REGION 103 946 107 946 51 HELIX 25 946 40 COLOUR_TEXT_REGION 25 946 40 946 50 HELIX 58 946 67 COLOUR_TEXT_REGION 58 946 67 946 50 HELIX 83 946 94 COLOUR_TEXT_REGION 83 946 94 946 50 HELIX 115 946 121 COLOUR_TEXT_REGION 115 946 121 946 50 HELIX 125 946 136 COLOUR_TEXT_REGION 125 946 136 946 50 STRAND 9 947 13 COLOUR_TEXT_REGION 9 947 13 947 51 STRAND 17 947 22 COLOUR_TEXT_REGION 17 947 22 947 51 STRAND 44 947 49 COLOUR_TEXT_REGION 44 947 49 947 51 STRAND 71 947 73 COLOUR_TEXT_REGION 71 947 73 947 51 STRAND 103 947 107 COLOUR_TEXT_REGION 103 947 107 947 51 HELIX 26 947 39 COLOUR_TEXT_REGION 26 947 39 947 50 HELIX 59 947 66 COLOUR_TEXT_REGION 59 947 66 947 50 HELIX 79 947 80 COLOUR_TEXT_REGION 79 947 80 947 50 HELIX 83 947 95 COLOUR_TEXT_REGION 83 947 95 947 50 HELIX 116 947 121 COLOUR_TEXT_REGION 116 947 121 947 50 HELIX 125 947 136 COLOUR_TEXT_REGION 125 947 136 947 50