QUERY                  : QRENLTTGHDGDVLWVRTVTGAGERVLLWNLGQDTRAVAEVKLPFTVPRRLLLHTEGREDLTLGAGEAVLVG : QUERY 
UniRef90_Q1J0Z2        : ERRNLGAGSVGDVLWVRHATAVGERVLLWNVGQAAVDVDRLDLPFSLPAQVLLHSEGREHRRLERGEAVLLG : UniRef90_Q1J0Z2
UniRef90_UPI00036EC507 : SRRNLQAGNEGNVLWVHHKTADGERTLLWNVGQEAVDAGALHLPFPLPTDVLLHSEGREDTTLNSGEAVLLG : UniRef90_UPI00036EC507
UniRef90_A0A016QRW1    : ERRNLSAGAVGDVLWVRHATQDGARVLLWNVGREAVDAESLDLPFPLPARVFLHSEGREDRTLERGEAALLG : UniRef90_A0A016QRW1
UniRef90_UPI0003B56CE8 : DRAALTAGHVGDVLWVRWQAPAGERVLLWNLAAVPLVPAELELPFPLSGGLLLRSEGPDEAPLAPGEAALLG : UniRef90_UPI0003B56CE8
UniRef90_H8GRZ7        : SRRGLSAGAVGRLLWVRHTSPQGERVLLWHTGEAACALGDLKLPFALPPQLLLHSEGQGHTALHPGEAVIL- : UniRef90_H8GRZ7
UniRef90_E8U8R4        : SRDTLHARADGDVLIVRRADEHGTRVLVWNLGGGPVDART----HADGGEIRLHSEARDDSTLQPGEAALL- : UniRef90_E8U8R4
UniRef90_UPI00037F4013 : SRRNIEAGHVGDVLWVRHQTGAGTRLLLWNTGHEDAALATLDL--ALPAEVIRHSEGRSEFELKPGEAVLLG : UniRef90_UPI00037F4013

                       : 1---------11--------21--------31--------41--------51--------61--------71 :
OrigSeq                : QRENLTTGHDGDVLWVRTVTGAGERVLLWNLGQDTRAVAEVKLPFTVPRRLLLHTEGREDLTLGAGEAVLVG : OrigSeq

Jnet                   : ------------EEEEEEE----EEEEEE--------------------EEEE--------------EEE-- : Jnet
jhmm                   : ------------EEEEEEE----EEEEEE--------------------EEEE--------------EEE-- : jhmm
jpssm                  : ------------EEEEEEE-----EEEEEE----------EE--------EEEE-------------EEE-- : jpssm

Lupas 14               : ------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------ : Lupas 28

Jnet_25                : ----B-B---BBBBBBBB----B-BBBBBBB----BBB--B-BBB-B---BBBBB-B-----B--BBBBBB- : Jnet_25
Jnet_5                 : ----------B-BBBB---------BBBB-----------B-B-------B----------------B-B-- : Jnet_5
Jnet_0                 : -------------B-----------BBB---------------------------------------B---- : Jnet_0
Jnet Rel               : 998877777663478987157881588862577643222112157787704651467776677776425369 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.