SILENT_MODE BLOCK_FILE jp_AAtetbL.concise.blc MAX_NSEQ 100 MAX_INPUT_LEN 102 OUTPUT_FILE jp_AAtetbL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 170 89 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 90 170 99 H SPACE SUB_CHARS 1 90 170 99 E SPACE SUB_CHARS 1 90 170 99 - SPACE STRAND 3 93 6 COLOUR_TEXT_REGION 3 93 6 93 51 STRAND 10 93 13 COLOUR_TEXT_REGION 10 93 13 93 51 STRAND 42 93 47 COLOUR_TEXT_REGION 42 93 47 93 51 STRAND 53 93 59 COLOUR_TEXT_REGION 53 93 59 93 51 STRAND 65 93 70 COLOUR_TEXT_REGION 65 93 70 93 51 STRAND 84 93 90 COLOUR_TEXT_REGION 84 93 90 93 51 STRAND 98 93 103 COLOUR_TEXT_REGION 98 93 103 93 51 STRAND 114 93 118 COLOUR_TEXT_REGION 114 93 118 93 51 STRAND 122 93 129 COLOUR_TEXT_REGION 122 93 129 93 51 STRAND 134 93 139 COLOUR_TEXT_REGION 134 93 139 93 51 STRAND 145 93 150 COLOUR_TEXT_REGION 145 93 150 93 51 STRAND 154 93 158 COLOUR_TEXT_REGION 154 93 158 93 51 STRAND 165 93 169 COLOUR_TEXT_REGION 165 93 169 93 51 STRAND 3 98 6 COLOUR_TEXT_REGION 3 98 6 98 51 STRAND 10 98 13 COLOUR_TEXT_REGION 10 98 13 98 51 STRAND 41 98 47 COLOUR_TEXT_REGION 41 98 47 98 51 STRAND 53 98 58 COLOUR_TEXT_REGION 53 98 58 98 51 STRAND 65 98 71 COLOUR_TEXT_REGION 65 98 71 98 51 STRAND 76 98 76 COLOUR_TEXT_REGION 76 98 76 98 51 STRAND 84 98 90 COLOUR_TEXT_REGION 84 98 90 98 51 STRAND 98 98 103 COLOUR_TEXT_REGION 98 98 103 98 51 STRAND 114 98 118 COLOUR_TEXT_REGION 114 98 118 98 51 STRAND 122 98 129 COLOUR_TEXT_REGION 122 98 129 98 51 STRAND 134 98 138 COLOUR_TEXT_REGION 134 98 138 98 51 STRAND 144 98 150 COLOUR_TEXT_REGION 144 98 150 98 51 STRAND 154 98 158 COLOUR_TEXT_REGION 154 98 158 98 51 STRAND 165 98 169 COLOUR_TEXT_REGION 165 98 169 98 51 STRAND 3 99 8 COLOUR_TEXT_REGION 3 99 8 99 51 STRAND 11 99 13 COLOUR_TEXT_REGION 11 99 13 99 51 STRAND 26 99 26 COLOUR_TEXT_REGION 26 99 26 99 51 STRAND 43 99 48 COLOUR_TEXT_REGION 43 99 48 99 51 STRAND 53 99 59 COLOUR_TEXT_REGION 53 99 59 99 51 STRAND 65 99 70 COLOUR_TEXT_REGION 65 99 70 99 51 STRAND 84 99 90 COLOUR_TEXT_REGION 84 99 90 99 51 STRAND 97 99 102 COLOUR_TEXT_REGION 97 99 102 99 51 STRAND 114 99 119 COLOUR_TEXT_REGION 114 99 119 99 51 STRAND 122 99 129 COLOUR_TEXT_REGION 122 99 129 99 51 STRAND 134 99 140 COLOUR_TEXT_REGION 134 99 140 99 51 STRAND 145 99 150 COLOUR_TEXT_REGION 145 99 150 99 51 STRAND 154 99 158 COLOUR_TEXT_REGION 154 99 158 99 51 STRAND 165 99 169 COLOUR_TEXT_REGION 165 99 169 99 51