SILENT_MODE BLOCK_FILE jp_D9BUkqh.concise.blc MAX_NSEQ 278 MAX_INPUT_LEN 280 OUTPUT_FILE jp_D9BUkqh.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 89 267 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 268 89 277 H SPACE SUB_CHARS 1 268 89 277 E SPACE SUB_CHARS 1 268 89 277 - SPACE STRAND 3 271 6 COLOUR_TEXT_REGION 3 271 6 271 51 STRAND 28 271 34 COLOUR_TEXT_REGION 28 271 34 271 51 STRAND 57 271 70 COLOUR_TEXT_REGION 57 271 70 271 51 STRAND 76 271 87 COLOUR_TEXT_REGION 76 271 87 271 51 HELIX 11 271 22 COLOUR_TEXT_REGION 11 271 22 271 50 HELIX 38 271 52 COLOUR_TEXT_REGION 38 271 52 271 50 STRAND 3 276 7 COLOUR_TEXT_REGION 3 276 7 276 51 STRAND 28 276 34 COLOUR_TEXT_REGION 28 276 34 276 51 STRAND 56 276 69 COLOUR_TEXT_REGION 56 276 69 276 51 STRAND 79 276 87 COLOUR_TEXT_REGION 79 276 87 276 51 HELIX 12 276 22 COLOUR_TEXT_REGION 12 276 22 276 50 HELIX 39 276 50 COLOUR_TEXT_REGION 39 276 50 276 50 STRAND 3 277 6 COLOUR_TEXT_REGION 3 277 6 277 51 STRAND 28 277 33 COLOUR_TEXT_REGION 28 277 33 277 51 STRAND 57 277 64 COLOUR_TEXT_REGION 57 277 64 277 51 STRAND 66 277 70 COLOUR_TEXT_REGION 66 277 70 277 51 STRAND 76 277 87 COLOUR_TEXT_REGION 76 277 87 277 51 HELIX 11 277 22 COLOUR_TEXT_REGION 11 277 22 277 50 HELIX 37 277 52 COLOUR_TEXT_REGION 37 277 52 277 50