SILENT_MODE
BLOCK_FILE jp_9wdEAwp.concise.blc
MAX_NSEQ 1056
MAX_INPUT_LEN 1058
OUTPUT_FILE jp_9wdEAwp.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 101 1045   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1046 101 1055 H SPACE
SUB_CHARS 1 1046 101 1055 E SPACE
SUB_CHARS 1 1046 101 1055 - SPACE
STRAND 29 1049 32
COLOUR_TEXT_REGION 29 1049 32 1049 51
STRAND 37 1049 45
COLOUR_TEXT_REGION 37 1049 45 1049 51
STRAND 55 1049 58
COLOUR_TEXT_REGION 55 1049 58 1049 51
STRAND 62 1049 66
COLOUR_TEXT_REGION 62 1049 66 1049 51
STRAND 70 1049 76
COLOUR_TEXT_REGION 70 1049 76 1049 51
HELIX 11 1049 19
COLOUR_TEXT_REGION 11 1049 19 1049 50
HELIX 86 1049 92
COLOUR_TEXT_REGION 86 1049 92 1049 50
STRAND 4 1054 5
COLOUR_TEXT_REGION 4 1054 5 1054 51
STRAND 29 1054 32
COLOUR_TEXT_REGION 29 1054 32 1054 51
STRAND 36 1054 44
COLOUR_TEXT_REGION 36 1054 44 1054 51
STRAND 55 1054 58
COLOUR_TEXT_REGION 55 1054 58 1054 51
STRAND 61 1054 66
COLOUR_TEXT_REGION 61 1054 66 1054 51
STRAND 70 1054 76
COLOUR_TEXT_REGION 70 1054 76 1054 51
HELIX 11 1054 18
COLOUR_TEXT_REGION 11 1054 18 1054 50
HELIX 86 1054 92
COLOUR_TEXT_REGION 86 1054 92 1054 50
STRAND 28 1055 32
COLOUR_TEXT_REGION 28 1055 32 1055 51
STRAND 37 1055 46
COLOUR_TEXT_REGION 37 1055 46 1055 51
STRAND 54 1055 58
COLOUR_TEXT_REGION 54 1055 58 1055 51
STRAND 62 1055 66
COLOUR_TEXT_REGION 62 1055 66 1055 51
STRAND 70 1055 77
COLOUR_TEXT_REGION 70 1055 77 1055 51
HELIX 11 1055 19
COLOUR_TEXT_REGION 11 1055 19 1055 50
HELIX 86 1055 92
COLOUR_TEXT_REGION 86 1055 92 1055 50