SILENT_MODE
BLOCK_FILE jp_2cwzKCV.concise.blc
MAX_NSEQ 254
MAX_INPUT_LEN 256
OUTPUT_FILE jp_2cwzKCV.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 85 243   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 244 85 253 H SPACE
SUB_CHARS 1 244 85 253 E SPACE
SUB_CHARS 1 244 85 253 - SPACE
STRAND 3 247 7
COLOUR_TEXT_REGION 3 247 7 247 51
STRAND 14 247 16
COLOUR_TEXT_REGION 14 247 16 247 51
STRAND 28 247 39
COLOUR_TEXT_REGION 28 247 39 247 51
STRAND 50 247 55
COLOUR_TEXT_REGION 50 247 55 247 51
STRAND 75 247 81
COLOUR_TEXT_REGION 75 247 81 247 51
HELIX 17 247 21
COLOUR_TEXT_REGION 17 247 21 247 50
HELIX 58 247 66
COLOUR_TEXT_REGION 58 247 66 247 50
STRAND 2 252 7
COLOUR_TEXT_REGION 2 252 7 252 51
STRAND 14 252 16
COLOUR_TEXT_REGION 14 252 16 252 51
STRAND 29 252 39
COLOUR_TEXT_REGION 29 252 39 252 51
STRAND 50 252 55
COLOUR_TEXT_REGION 50 252 55 252 51
STRAND 75 252 82
COLOUR_TEXT_REGION 75 252 82 252 51
HELIX 17 252 21
COLOUR_TEXT_REGION 17 252 21 252 50
HELIX 58 252 66
COLOUR_TEXT_REGION 58 252 66 252 50
STRAND 3 253 7
COLOUR_TEXT_REGION 3 253 7 253 51
STRAND 14 253 14
COLOUR_TEXT_REGION 14 253 14 253 51
STRAND 28 253 39
COLOUR_TEXT_REGION 28 253 39 253 51
STRAND 50 253 55
COLOUR_TEXT_REGION 50 253 55 253 51
STRAND 74 253 81
COLOUR_TEXT_REGION 74 253 81 253 51
HELIX 15 253 21
COLOUR_TEXT_REGION 15 253 21 253 50
HELIX 58 253 66
COLOUR_TEXT_REGION 58 253 66 253 50