SILENT_MODE BLOCK_FILE jp_aI5VDEM.concise.blc MAX_NSEQ 342 MAX_INPUT_LEN 344 OUTPUT_FILE jp_aI5VDEM.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 100 331 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 332 100 341 H SPACE SUB_CHARS 1 332 100 341 E SPACE SUB_CHARS 1 332 100 341 - SPACE STRAND 3 335 7 COLOUR_TEXT_REGION 3 335 7 335 51 STRAND 15 335 16 COLOUR_TEXT_REGION 15 335 16 335 51 STRAND 23 335 28 COLOUR_TEXT_REGION 23 335 28 335 51 STRAND 35 335 36 COLOUR_TEXT_REGION 35 335 36 335 51 STRAND 43 335 49 COLOUR_TEXT_REGION 43 335 49 335 51 STRAND 54 335 60 COLOUR_TEXT_REGION 54 335 60 335 51 STRAND 66 335 66 COLOUR_TEXT_REGION 66 335 66 335 51 STRAND 76 335 79 COLOUR_TEXT_REGION 76 335 79 335 51 STRAND 84 335 88 COLOUR_TEXT_REGION 84 335 88 335 51 STRAND 93 335 98 COLOUR_TEXT_REGION 93 335 98 335 51 STRAND 2 340 7 COLOUR_TEXT_REGION 2 340 7 340 51 STRAND 15 340 16 COLOUR_TEXT_REGION 15 340 16 340 51 STRAND 23 340 28 COLOUR_TEXT_REGION 23 340 28 340 51 STRAND 42 340 49 COLOUR_TEXT_REGION 42 340 49 340 51 STRAND 54 340 59 COLOUR_TEXT_REGION 54 340 59 340 51 STRAND 66 340 67 COLOUR_TEXT_REGION 66 340 67 340 51 STRAND 76 340 79 COLOUR_TEXT_REGION 76 340 79 340 51 STRAND 84 340 88 COLOUR_TEXT_REGION 84 340 88 340 51 STRAND 93 340 98 COLOUR_TEXT_REGION 93 340 98 340 51 STRAND 3 341 7 COLOUR_TEXT_REGION 3 341 7 341 51 STRAND 15 341 17 COLOUR_TEXT_REGION 15 341 17 341 51 STRAND 23 341 28 COLOUR_TEXT_REGION 23 341 28 341 51 STRAND 33 341 37 COLOUR_TEXT_REGION 33 341 37 341 51 STRAND 44 341 50 COLOUR_TEXT_REGION 44 341 50 341 51 STRAND 54 341 60 COLOUR_TEXT_REGION 54 341 60 341 51 STRAND 76 341 79 COLOUR_TEXT_REGION 76 341 79 341 51 STRAND 84 341 88 COLOUR_TEXT_REGION 84 341 88 341 51 STRAND 93 341 98 COLOUR_TEXT_REGION 93 341 98 341 51