QUERY : AQQGVFTLPARINFGVTVLVNSAATQHVEIFVDNEPRAAFSGVGTGDNNLGTKVINSGSGNVRVQITANGRQSDLVSSQLVLANKLNLAVVGSEDGTDMDYNDSIVILNWPLG : QUERY
UniRef90_A0A022PG10 : --KHCFQLPQSIRFGLTAYSNTDHRQTVKVYIDNLLVDTLTGKGT-DNLMATKAYTSGTGKICIEIEGDGKPCKLRYAYNTLDEKPGTATIGAENGTKNNYNDCVVILNWPL- : UniRef90_A0A022PG10
UniRef90_W3V8N5 : --KHCFKLPHSIRFGLTAYVNTDHQQTIKVYIDDRLVDTVTGKGIS-HIIDVKTYTSGTGKICIEITGNGKPCKLRYAYNPLDEKPGTTIIGASNGINNNYDDSVVVLNWPL- : UniRef90_W3V8N5
UniRef90_C7BQC2 : --KYCFQLPQSIRFGLIAYANTDKPQTVKVYIDDLLVDTLTSTSKGNNLMATKAYTSGTGKICIEIAGDGKPCKLRYFDNIFDGNPGTAIISAENGTNNHYNDSVVFLNWPL- : UniRef90_C7BQC2
UniRef90_G0B3P7 : --KHCFKLPPNTTFGLTAYANTAHKQTVKLYIDDNLVDTYNGKGLNNTPMNTKVYHSGAGNVCVQVEGDGKPCKLHYSDNTLDGKPGFATIGAESGSDDDYNDSVVVLNWPL- : UniRef90_G0B3P7
UniRef90_Q7MZP7 : --KHCFQLPQSIRFGLIAYTNTTHKQTVNVYIDDLLVDTFTGKGT-----DTKAYTSGAGNVCIEIIGDGKPCKLRYSYNTLDGKPGTVTIGAENDANNNYNDSVVVLNWPL- : UniRef90_Q7MZP7
UniRef90_Q390S0 : -RDGLFNLPPNIAFGVTALVNSSAQQTIEVFIDDNPAATFQGAGTQDANLNTQIVNSGKGKVRVVVTANGKPSKIGSRQVDIFKKTYFGLVGSEDGTDGDYNDGIAILNWPLG : UniRef90_Q390S0
UniRef90_Q390S1 : -RDGTFNLPPNIKFGVTALTNAANDQTIDIYVDDNPAATFKGAGVQDQNLGTKVLDSGKGRVRVIVMANGKPSRLGSRQVDIFKKSYFGIVGSEDGADDDYNDGIVFLNWPLG : UniRef90_Q390S1
UniRef90_UPI00036AD237 : -RNGIFNLPPNTAFGVTVLVNSAAVQTVSVFVDDKPSATFTGSGTSDRNLQTQILNSGKGRVHVIVEANGKQSKLGSRQVDIFQKAYFGLVASEDGTDNDYNDGLVILNWPLG : UniRef90_UPI00036AD237
UniRef90_U7R335 : --KYCIQLPHNIKFGLSAYVNTDHQQTIKVYIDDQLADTLTGKGV-NSVLGFKTYSSGTGKVCIEIAGDGKPCKLRYANNPLDAKPGTTIIGAENGTANKYNDSVVVLIWP-- : UniRef90_U7R335
UniRef90_B5SKS5 : AQQGVFTLPANTSFGVTAFANAANTQTIQVLVDNVVKATFTGAGTSDKLLGSQVLNSGSGAIKIQVSVNGKPSDLVSNQTILANKLNFAMVGSEDGTDNDYNDGIAVLNWPLG : UniRef90_B5SKS5
UniRef90_B7V2X6 : ATQGVFTLPANTRFGVTAFANSSGTQTVNVLVNNETAATFSGQSTNNAVIGTQVLNSGSGKVQVQVSVNGRPSDLVSAQVILTNELNFALVGSEDGTDNDYNDAVVVINWPLG : UniRef90_B7V2X6
UniRef90_A0AWZ8 : -RAGEFSIPPNTDFRAIFFANAAEQQHIKLFIDSQEPAAYHKLTTRDGPREA-TLNSGNGKIRFEVSVNGKPSATDARLAPINGKVNFGIVVSEDGHDSDYNDGIVVLQWPIG : UniRef90_A0AWZ8
UniRef90_Q39MQ9 : -RNGNFSLPPNTAFKAIFYANAADRQDLKLFIDDAPEPAATFVGNSEDGVRLFTLNSKGGKIRIEASANGRQSATDARLAPLGDTVWLGWLGAEDGADADYNDGIVILQWPI- : UniRef90_Q39MQ9
UniRef90_V5AAR4 : -RNANFTLPPNTKFRAVLWANAAEQQHIKIFIDSETPALYHKLTTRDGSREATLDSGSDGKVRVEVSVNGEPSATDARLAPIKGKVNFGITVSEDRHDSDYNDGIVVLQWPIG : UniRef90_V5AAR4
UniRef90_S2L8I0 : -QQGTFTLPANIRFGITALVNSSGKQIVTVLVDGKTAAQFEGQSTSNEVIGSQVLNSGSGDVQITVSVNGQQSSLTSAQLILANRLNVVALGSEDSTDNDYNDTVAILNWPLG : UniRef90_S2L8I0
UniRef90_E1TEZ1 : ---------------MTALVNSAAEQTITVYVDDNPAATFQGNGTQDKNLQTQVLNSGKGKVKVVVSANGKPSKLGSRQVDIFKKTYFGLVGSEDGTDNDYNDSLVVLNWPLG : UniRef90_E1TEZ1
UniRef90_W3VB50 : --KYCFQLPQSIRFDLTAYDNTTHQQTVKVYIGNLLVDRLTRRGT-DNVIGVKTYT----KVCIEIVGDGKPCKLRYAYSPLDEKPGTVIIGAENGINNNYNNSMVVLNWPL- : UniRef90_W3VB50
UniRef90_U1XDA4 : --QYNFQISPDTEFGLIAYANSERLQTVSIYVDDLPVDAFSGKGDGNTVIGIRTYLSGTGKIGIQIQKEGAEPGRVNFYGRLDSKASSIMVSSESDTDNGAPDCTVVINTPL- : UniRef90_U1XDA4
UniRef90_W3VAZ4 : --KHCFELPHSIRFGLTAYANSTHQQTIKVYIDNLLVDTLTRRGT-DNVIGVKTYTSGTGKVCIEIVGDSKPCKLRYFDNTLDGKPGAVNNGA-------------------- : UniRef90_W3VAZ4
UniRef90_U7R0T8 : ------------------------------YIDGLLIGRLTGKETT-----TKSYTSGTGKICIEIEGNGKPCKLRYAYNPLDEKPGTTIIGASNGTHNNYDDSVVVLNWPL- : UniRef90_U7R0T8
UniRef90_V5A1G0 : -RNANFTLPPNTDFRAIFFANSDQQQHIKLFIADEPAADYT-LTTRDGTREA-TLNSGNGKIRVEVWVDGKLSAADARLAPISGKVNFGIVVTEDQTGIDYNDGIVLLQWPI- : UniRef90_V5A1G0
UniRef90_A0A024RFW0 : ---HPLRMPAGTRFAVTVLFNSSVEQTVEVYLDQDTQPSYTTTGSGDDNRGTTILTAKTGGVRVKVIADGRELPLISRQVDLPHSQTTAVIAAYNGSDKDYNDAYVLCNW--- : UniRef90_A0A024RFW0
UniRef90_A0A024RHX5 : --EHPFHVPAGTQFAVTVLLNSKVEQTIAVYLDDDAQPAYTGTGSGDVNQGTVVLTAKQGKVTLKASAGGKTSLFHAGQKDIPTKRYIGVIAIYNGADGDYDDALVFFNWPL- : UniRef90_A0A024RHX5
UniRef90_U7R5P3 : --KHCFQLPQSIRFGLIAYTNTTHQQTVKVYIDDFLVDTFTGKGTY-----TKAYTSGTGKVCIEIIGDGKPCNSVTPIIPL------------------------------- : UniRef90_U7R5P3
UniRef90_F2L851 : ------------------LANAAEQQHIKLFIDSQEPAAYHKLTTRDGPRES-TLNSGNGKIRFEVTVNGKKSDGQPF------TVNFGVLVSEDGHDSDYNDGIAVLQWPIG : UniRef90_F2L851
UniRef90_W6W9D9 : ---ATILLPPSTNVFVTALTNAADLQKVTITVPGASPILWQGTGEGNHQIGSTFVMTPSGSVDVQHSANGQESALLPGGCSI-GTMNLQVLLSEDQVDRDYNDAVVQFLW--- : UniRef90_W6W9D9
UniRef90_A0A024RKS5 : ASNTQISLQPNTRYGATVLVNSPVVQTVTLHIDGGNANGQQFVGSATSNLGTYVFSTGSGKVTLDVTSDGASSSISVR--DMLSSLGCVVAGASNDTHQLFNDALVVFNGPL- : UniRef90_A0A024RKS5
UniRef90_A2WFK2 : --------------------------------------ATAGDQTGDSVMGTTQQASGSGNVRITVTSNGKLTPIKSTQSSIDSNLNWGIVGVPD-ANGHYNDCVVFLNWPI- : UniRef90_A2WFK2
UniRef90_A0A024RNA2 : -TQETIQLETGKKYGVTVLVNSTSLQTVNLYLDGTPAHTFTGQATGPSNMGTYVFTAGTGKASITVTS-GTQASALTLRDVVDDSVDFSMVGAPNSSPQLFNDVIIAVNGPL- : UniRef90_A0A024RNA2
UniRef90_S4XVJ0 : ---------------IKVTTNSRHTQRITVTRNDEVLCVFAGSGERNAMTGSTIVANSRAKLQAKINAEWRKSQLKSGGPYAIGSYNLLVIVAENGDDSDYNDSVLEFSW--- : UniRef90_S4XVJ0
UniRef90_D3VAZ0 : ------------------------------------VDTFTGKVTY-----TKAYTSGTGKVCIEIIGDGKPCKLRYSYNTLDGKPGTVTIGAENDSNNNYNDSVVVLNWPL- : UniRef90_D3VAZ0
UniRef90_E9E2D9 : ---------AEINFGLKVKANSRSVQYVRIKVDNEEFEA-SGSGEGNTIIFDRKLGTPCKKISYQTENGGKQSKLRSGGPYDIGRYKTLIVVAENGDDADYNDVIFEISG--- : UniRef90_E9E2D9
UniRef90_T0QCB5 : ------------------------------YIDGLLIGRLTGKETT-----TKSYTSGTGKICIEIEGNGKPCKLRYSYNTLEGKPGAVIIG--------------------- : UniRef90_T0QCB5
UniRef90_E9EKE7 : ---------AEINFGLKVKTNSKSVQNVQIKVDDQEFQV-SGSGERHNLIFDRQLDTPCKKISATFTANGDKSKLKFGGPYDIGRYKTITVVAENGDDIDYNDAIFEISG--- : UniRef90_E9EKE7
UniRef90_W4LUB4 : ----PFNLLPGKTTQYSMSTQADDTQEVVVKANGNVLMSESASGTHEYLIGTGTFPAGPNPHTITITANGNTSSVHASTPITDDDGNFLIFASEDGGDGDYNDCFVTL----- : UniRef90_W4LUB4
UniRef90_V3V0H2 : -----ISIPANKIVFWSALVQSSANQFIQLK-DSNANIVFTVQGASPTQIGSQADTSGSYSIWIGTNGGKSYSQILWSQDVIGSSVYFGIFASEDAMDYDYNDSFIQLQW--- : UniRef90_V3V0H2
UniRef90_UPI0002195E79 : --------------GVFFLVNMT-TQTMDVTIEDENAQLFHGSRTGTDPLPSGTFTSLSGKARIIIRCETATNLDVLSEHLDIKKADGGLIVAEDSTDADYNDLYVIVGW--- : UniRef90_UPI0002195E79
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111 :
OrigSeq : AQQGVFTLPARINFGVTVLVNSAATQHVEIFVDNEPRAAFSGVGTGDNNLGTKVINSGSGNVRVQITANGRQSDLVSSQLVLANKLNLAVVGSEDGTDMDYNDSIVILNWPLG : OrigSeq
Jnet : -----EE------EEEEEEE-----EEEEEEE-------EEEEE-----EEEEEEE----EEEEEEEE-------------------EEEEEE----------EEEEEE---- : Jnet
jhmm : -----EE------EEEEEEE-----EEEEEEE-------EEEEE-----EEEEEE------EEEEEEE-------------------EEEEEE----------EEEEEE---- : jhmm
jpssm : ----EEEE-----EEEEEEE----EEEEEEEE--------EEE------EEEEEEE----EEEEEEEE-------------------EEEEEE---------EEEEEEE---- : jpssm
Lupas 14 : ----------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : ----------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28 : ----------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : -----B-B---B-BBBBBBBBB---B-B-BBB------BB-B-B----BBBB-BB-B----BBB-B-B-B--B-B-B--B-B---BBBBBBBBBB-----B-BBBBBBBB--- : Jnet_25
Jnet_5 : -------B-------B-B-B-------B-B---------------------B---------B-B-B---------------------BBBBBB----------BBB-B----- : Jnet_5
Jnet_0 : ---------------B-B---------B-B---------------------------------B-B----------------------BBBB-----------B-B------- : Jnet_0
Jnet Rel : 99861670578845899986488727898885377775320101367745899981488518999885365456667766677777448887436777777526889854899 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.