SILENT_MODE
BLOCK_FILE jp_qHRYzbu.concise.blc
MAX_NSEQ 690
MAX_INPUT_LEN 692
OUTPUT_FILE jp_qHRYzbu.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 173 679   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 680 173 689 H SPACE
SUB_CHARS 1 680 173 689 E SPACE
SUB_CHARS 1 680 173 689 - SPACE
STRAND 2 683 10
COLOUR_TEXT_REGION 2 683 10 683 51
STRAND 17 683 24
COLOUR_TEXT_REGION 17 683 24 683 51
STRAND 31 683 37
COLOUR_TEXT_REGION 31 683 37 683 51
STRAND 47 683 51
COLOUR_TEXT_REGION 47 683 51 683 51
STRAND 59 683 61
COLOUR_TEXT_REGION 59 683 61 683 51
STRAND 84 683 89
COLOUR_TEXT_REGION 84 683 89 683 51
STRAND 144 683 148
COLOUR_TEXT_REGION 144 683 148 683 51
STRAND 163 683 171
COLOUR_TEXT_REGION 163 683 171 683 51
HELIX 69 683 80
COLOUR_TEXT_REGION 69 683 80 683 50
HELIX 96 683 107
COLOUR_TEXT_REGION 96 683 107 683 50
HELIX 130 683 139
COLOUR_TEXT_REGION 130 683 139 683 50
STRAND 3 688 10
COLOUR_TEXT_REGION 3 688 10 688 51
STRAND 17 688 24
COLOUR_TEXT_REGION 17 688 24 688 51
STRAND 31 688 37
COLOUR_TEXT_REGION 31 688 37 688 51
STRAND 47 688 51
COLOUR_TEXT_REGION 47 688 51 688 51
STRAND 84 688 89
COLOUR_TEXT_REGION 84 688 89 688 51
STRAND 144 688 148
COLOUR_TEXT_REGION 144 688 148 688 51
STRAND 159 688 159
COLOUR_TEXT_REGION 159 688 159 688 51
STRAND 164 688 171
COLOUR_TEXT_REGION 164 688 171 688 51
HELIX 69 688 80
COLOUR_TEXT_REGION 69 688 80 688 50
HELIX 96 688 106
COLOUR_TEXT_REGION 96 688 106 688 50
HELIX 130 688 139
COLOUR_TEXT_REGION 130 688 139 688 50
STRAND 2 689 11
COLOUR_TEXT_REGION 2 689 11 689 51
STRAND 17 689 24
COLOUR_TEXT_REGION 17 689 24 689 51
STRAND 31 689 37
COLOUR_TEXT_REGION 31 689 37 689 51
STRAND 46 689 50
COLOUR_TEXT_REGION 46 689 50 689 51
STRAND 59 689 63
COLOUR_TEXT_REGION 59 689 63 689 51
STRAND 85 689 89
COLOUR_TEXT_REGION 85 689 89 689 51
STRAND 144 689 148
COLOUR_TEXT_REGION 144 689 148 689 51
STRAND 156 689 156
COLOUR_TEXT_REGION 156 689 156 689 51
STRAND 163 689 171
COLOUR_TEXT_REGION 163 689 171 689 51
HELIX 71 689 80
COLOUR_TEXT_REGION 71 689 80 689 50
HELIX 97 689 108
COLOUR_TEXT_REGION 97 689 108 689 50
HELIX 117 689 117
COLOUR_TEXT_REGION 117 689 117 689 50
HELIX 129 689 140
COLOUR_TEXT_REGION 129 689 140 689 50