SILENT_MODE
BLOCK_FILE jp_VYodDkO.concise.blc
MAX_NSEQ 279
MAX_INPUT_LEN 281
OUTPUT_FILE jp_VYodDkO.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 106 268   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 269 106 278 H SPACE
SUB_CHARS 1 269 106 278 E SPACE
SUB_CHARS 1 269 106 278 - SPACE
HELIX 6 272 16
COLOUR_TEXT_REGION 6 272 16 272 50
HELIX 21 272 37
COLOUR_TEXT_REGION 21 272 37 272 50
HELIX 43 272 44
COLOUR_TEXT_REGION 43 272 44 272 50
HELIX 46 272 58
COLOUR_TEXT_REGION 46 272 58 272 50
HELIX 62 272 75
COLOUR_TEXT_REGION 62 272 75 272 50
HELIX 81 272 98
COLOUR_TEXT_REGION 81 272 98 272 50
HELIX 6 277 16
COLOUR_TEXT_REGION 6 277 16 277 50
HELIX 21 277 37
COLOUR_TEXT_REGION 21 277 37 277 50
HELIX 43 277 58
COLOUR_TEXT_REGION 43 277 58 277 50
HELIX 62 277 75
COLOUR_TEXT_REGION 62 277 75 277 50
HELIX 81 277 98
COLOUR_TEXT_REGION 81 277 98 277 50
HELIX 5 278 16
COLOUR_TEXT_REGION 5 278 16 278 50
HELIX 21 278 37
COLOUR_TEXT_REGION 21 278 37 278 50
HELIX 46 278 58
COLOUR_TEXT_REGION 46 278 58 278 50
HELIX 63 278 76
COLOUR_TEXT_REGION 63 278 76 278 50
HELIX 81 278 99
COLOUR_TEXT_REGION 81 278 99 278 50