SILENT_MODE
BLOCK_FILE jp_u6XxBKd.concise.blc
MAX_NSEQ 830
MAX_INPUT_LEN 832
OUTPUT_FILE jp_u6XxBKd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 89 819   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 820 89 829 H SPACE
SUB_CHARS 1 820 89 829 E SPACE
SUB_CHARS 1 820 89 829 - SPACE
HELIX 3 823 27
COLOUR_TEXT_REGION 3 823 27 823 50
HELIX 29 823 47
COLOUR_TEXT_REGION 29 823 47 823 50
HELIX 55 823 85
COLOUR_TEXT_REGION 55 823 85 823 50
HELIX 4 828 27
COLOUR_TEXT_REGION 4 828 27 828 50
HELIX 29 828 47
COLOUR_TEXT_REGION 29 828 47 828 50
HELIX 55 828 76
COLOUR_TEXT_REGION 55 828 76 828 50
HELIX 78 828 86
COLOUR_TEXT_REGION 78 828 86 828 50
HELIX 2 829 32
COLOUR_TEXT_REGION 2 829 32 829 50
HELIX 34 829 48
COLOUR_TEXT_REGION 34 829 48 829 50
HELIX 55 829 85
COLOUR_TEXT_REGION 55 829 85 829 50