SILENT_MODE
BLOCK_FILE jp_HLWvaUj.concise.blc
MAX_NSEQ 254
MAX_INPUT_LEN 256
OUTPUT_FILE jp_HLWvaUj.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 243   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 244 80 253 H SPACE
SUB_CHARS 1 244 80 253 E SPACE
SUB_CHARS 1 244 80 253 - SPACE
STRAND 3 247 9
COLOUR_TEXT_REGION 3 247 9 247 51
STRAND 13 247 18
COLOUR_TEXT_REGION 13 247 18 247 51
STRAND 41 247 44
COLOUR_TEXT_REGION 41 247 44 247 51
STRAND 48 247 52
COLOUR_TEXT_REGION 48 247 52 247 51
STRAND 74 247 79
COLOUR_TEXT_REGION 74 247 79 247 51
HELIX 24 247 35
COLOUR_TEXT_REGION 24 247 35 247 50
HELIX 56 247 66
COLOUR_TEXT_REGION 56 247 66 247 50
STRAND 3 252 9
COLOUR_TEXT_REGION 3 252 9 252 51
STRAND 13 252 18
COLOUR_TEXT_REGION 13 252 18 252 51
STRAND 41 252 44
COLOUR_TEXT_REGION 41 252 44 252 51
STRAND 48 252 52
COLOUR_TEXT_REGION 48 252 52 252 51
STRAND 74 252 79
COLOUR_TEXT_REGION 74 252 79 252 51
HELIX 24 252 35
COLOUR_TEXT_REGION 24 252 35 252 50
HELIX 55 252 66
COLOUR_TEXT_REGION 55 252 66 252 50
STRAND 3 253 8
COLOUR_TEXT_REGION 3 253 8 253 51
STRAND 13 253 18
COLOUR_TEXT_REGION 13 253 18 253 51
STRAND 41 253 43
COLOUR_TEXT_REGION 41 253 43 253 51
STRAND 48 253 52
COLOUR_TEXT_REGION 48 253 52 253 51
STRAND 73 253 79
COLOUR_TEXT_REGION 73 253 79 253 51
HELIX 24 253 35
COLOUR_TEXT_REGION 24 253 35 253 50
HELIX 58 253 65
COLOUR_TEXT_REGION 58 253 65 253 50