SILENT_MODE BLOCK_FILE jp_lEpHdqa.concise.blc MAX_NSEQ 1029 MAX_INPUT_LEN 1031 OUTPUT_FILE jp_lEpHdqa.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 204 1018 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1019 204 1028 H SPACE SUB_CHARS 1 1019 204 1028 E SPACE SUB_CHARS 1 1019 204 1028 - SPACE STRAND 2 1022 7 COLOUR_TEXT_REGION 2 1022 7 1022 51 STRAND 30 1022 34 COLOUR_TEXT_REGION 30 1022 34 1022 51 STRAND 96 1022 98 COLOUR_TEXT_REGION 96 1022 98 1022 51 STRAND 120 1022 121 COLOUR_TEXT_REGION 120 1022 121 1022 51 STRAND 147 1022 151 COLOUR_TEXT_REGION 147 1022 151 1022 51 STRAND 178 1022 181 COLOUR_TEXT_REGION 178 1022 181 1022 51 STRAND 198 1022 199 COLOUR_TEXT_REGION 198 1022 199 1022 51 HELIX 16 1022 25 COLOUR_TEXT_REGION 16 1022 25 1022 50 HELIX 44 1022 52 COLOUR_TEXT_REGION 44 1022 52 1022 50 HELIX 73 1022 89 COLOUR_TEXT_REGION 73 1022 89 1022 50 HELIX 106 1022 114 COLOUR_TEXT_REGION 106 1022 114 1022 50 HELIX 131 1022 138 COLOUR_TEXT_REGION 131 1022 138 1022 50 HELIX 159 1022 173 COLOUR_TEXT_REGION 159 1022 173 1022 50 HELIX 184 1022 184 COLOUR_TEXT_REGION 184 1022 184 1022 50 STRAND 2 1027 7 COLOUR_TEXT_REGION 2 1027 7 1027 51 STRAND 30 1027 35 COLOUR_TEXT_REGION 30 1027 35 1027 51 STRAND 56 1027 58 COLOUR_TEXT_REGION 56 1027 58 1027 51 STRAND 96 1027 98 COLOUR_TEXT_REGION 96 1027 98 1027 51 STRAND 120 1027 121 COLOUR_TEXT_REGION 120 1027 121 1027 51 STRAND 147 1027 151 COLOUR_TEXT_REGION 147 1027 151 1027 51 STRAND 178 1027 180 COLOUR_TEXT_REGION 178 1027 180 1027 51 STRAND 198 1027 199 COLOUR_TEXT_REGION 198 1027 199 1027 51 HELIX 16 1027 25 COLOUR_TEXT_REGION 16 1027 25 1027 50 HELIX 44 1027 52 COLOUR_TEXT_REGION 44 1027 52 1027 50 HELIX 72 1027 89 COLOUR_TEXT_REGION 72 1027 89 1027 50 HELIX 106 1027 115 COLOUR_TEXT_REGION 106 1027 115 1027 50 HELIX 131 1027 139 COLOUR_TEXT_REGION 131 1027 139 1027 50 HELIX 159 1027 173 COLOUR_TEXT_REGION 159 1027 173 1027 50 STRAND 2 1028 7 COLOUR_TEXT_REGION 2 1028 7 1028 51 STRAND 30 1028 33 COLOUR_TEXT_REGION 30 1028 33 1028 51 STRAND 147 1028 150 COLOUR_TEXT_REGION 147 1028 150 1028 51 STRAND 178 1028 180 COLOUR_TEXT_REGION 178 1028 180 1028 51 STRAND 198 1028 200 COLOUR_TEXT_REGION 198 1028 200 1028 51 HELIX 16 1028 25 COLOUR_TEXT_REGION 16 1028 25 1028 50 HELIX 44 1028 51 COLOUR_TEXT_REGION 44 1028 51 1028 50 HELIX 76 1028 88 COLOUR_TEXT_REGION 76 1028 88 1028 50 HELIX 106 1028 113 COLOUR_TEXT_REGION 106 1028 113 1028 50 HELIX 132 1028 137 COLOUR_TEXT_REGION 132 1028 137 1028 50 HELIX 159 1028 173 COLOUR_TEXT_REGION 159 1028 173 1028 50 HELIX 181 1028 185 COLOUR_TEXT_REGION 181 1028 185 1028 50