SILENT_MODE
BLOCK_FILE jp_QAKpf7N.concise.blc
MAX_NSEQ 584
MAX_INPUT_LEN 586
OUTPUT_FILE jp_QAKpf7N.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 100 573   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 574 100 583 H SPACE
SUB_CHARS 1 574 100 583 E SPACE
SUB_CHARS 1 574 100 583 - SPACE
STRAND 9 577 12
COLOUR_TEXT_REGION 9 577 12 577 51
STRAND 18 577 19
COLOUR_TEXT_REGION 18 577 19 577 51
STRAND 24 577 35
COLOUR_TEXT_REGION 24 577 35 577 51
STRAND 40 577 45
COLOUR_TEXT_REGION 40 577 45 577 51
STRAND 51 577 60
COLOUR_TEXT_REGION 51 577 60 577 51
STRAND 66 577 69
COLOUR_TEXT_REGION 66 577 69 577 51
STRAND 74 577 79
COLOUR_TEXT_REGION 74 577 79 577 51
STRAND 90 577 93
COLOUR_TEXT_REGION 90 577 93 577 51
STRAND 9 582 13
COLOUR_TEXT_REGION 9 582 13 582 51
STRAND 23 582 36
COLOUR_TEXT_REGION 23 582 36 582 51
STRAND 40 582 44
COLOUR_TEXT_REGION 40 582 44 582 51
STRAND 51 582 60
COLOUR_TEXT_REGION 51 582 60 582 51
STRAND 67 582 69
COLOUR_TEXT_REGION 67 582 69 582 51
STRAND 73 582 78
COLOUR_TEXT_REGION 73 582 78 582 51
STRAND 91 582 93
COLOUR_TEXT_REGION 91 582 93 582 51
STRAND 16 583 19
COLOUR_TEXT_REGION 16 583 19 583 51
STRAND 25 583 28
COLOUR_TEXT_REGION 25 583 28 583 51
STRAND 40 583 45
COLOUR_TEXT_REGION 40 583 45 583 51
STRAND 51 583 60
COLOUR_TEXT_REGION 51 583 60 583 51
STRAND 64 583 69
COLOUR_TEXT_REGION 64 583 69 583 51
STRAND 75 583 79
COLOUR_TEXT_REGION 75 583 79 583 51
STRAND 88 583 93
COLOUR_TEXT_REGION 88 583 93 583 51
HELIX 29 583 33
COLOUR_TEXT_REGION 29 583 33 583 50