SILENT_MODE
BLOCK_FILE jp_S2KETWg.concise.blc
MAX_NSEQ 425
MAX_INPUT_LEN 427
OUTPUT_FILE jp_S2KETWg.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 93 414   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 415 93 424 H SPACE
SUB_CHARS 1 415 93 424 E SPACE
SUB_CHARS 1 415 93 424 - SPACE
STRAND 4 418 11
COLOUR_TEXT_REGION 4 418 11 418 51
STRAND 28 418 32
COLOUR_TEXT_REGION 28 418 32 418 51
STRAND 37 418 41
COLOUR_TEXT_REGION 37 418 41 418 51
STRAND 50 418 50
COLOUR_TEXT_REGION 50 418 50 418 51
STRAND 56 418 62
COLOUR_TEXT_REGION 56 418 62 418 51
STRAND 73 418 78
COLOUR_TEXT_REGION 73 418 78 418 51
STRAND 82 418 90
COLOUR_TEXT_REGION 82 418 90 418 51
STRAND 3 423 11
COLOUR_TEXT_REGION 3 423 11 423 51
STRAND 27 423 32
COLOUR_TEXT_REGION 27 423 32 423 51
STRAND 37 423 42
COLOUR_TEXT_REGION 37 423 42 423 51
STRAND 56 423 62
COLOUR_TEXT_REGION 56 423 62 423 51
STRAND 73 423 78
COLOUR_TEXT_REGION 73 423 78 423 51
STRAND 81 423 89
COLOUR_TEXT_REGION 81 423 89 423 51
STRAND 4 424 11
COLOUR_TEXT_REGION 4 424 11 424 51
STRAND 20 424 23
COLOUR_TEXT_REGION 20 424 23 424 51
STRAND 28 424 34
COLOUR_TEXT_REGION 28 424 34 424 51
STRAND 49 424 51
COLOUR_TEXT_REGION 49 424 51 424 51
STRAND 56 424 62
COLOUR_TEXT_REGION 56 424 62 424 51
STRAND 73 424 78
COLOUR_TEXT_REGION 73 424 78 424 51
STRAND 82 424 90
COLOUR_TEXT_REGION 82 424 90 424 51
HELIX 48 424 48
COLOUR_TEXT_REGION 48 424 48 424 50