SILENT_MODE
BLOCK_FILE jp_pjXIxmT.concise.blc
MAX_NSEQ 402
MAX_INPUT_LEN 404
OUTPUT_FILE jp_pjXIxmT.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 99 391   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 392 99 401 H SPACE
SUB_CHARS 1 392 99 401 E SPACE
SUB_CHARS 1 392 99 401 - SPACE
STRAND 2 395 9
COLOUR_TEXT_REGION 2 395 9 395 51
STRAND 29 395 36
COLOUR_TEXT_REGION 29 395 36 395 51
STRAND 46 395 55
COLOUR_TEXT_REGION 46 395 55 395 51
STRAND 62 395 70
COLOUR_TEXT_REGION 62 395 70 395 51
STRAND 76 395 82
COLOUR_TEXT_REGION 76 395 82 395 51
STRAND 87 395 98
COLOUR_TEXT_REGION 87 395 98 395 51
STRAND 2 400 9
COLOUR_TEXT_REGION 2 400 9 400 51
STRAND 29 400 36
COLOUR_TEXT_REGION 29 400 36 400 51
STRAND 46 400 55
COLOUR_TEXT_REGION 46 400 55 400 51
STRAND 63 400 69
COLOUR_TEXT_REGION 63 400 69 400 51
STRAND 76 400 82
COLOUR_TEXT_REGION 76 400 82 400 51
STRAND 87 400 97
COLOUR_TEXT_REGION 87 400 97 400 51
STRAND 2 401 8
COLOUR_TEXT_REGION 2 401 8 401 51
STRAND 29 401 37
COLOUR_TEXT_REGION 29 401 37 401 51
STRAND 46 401 55
COLOUR_TEXT_REGION 46 401 55 401 51
STRAND 62 401 71
COLOUR_TEXT_REGION 62 401 71 401 51
STRAND 76 401 82
COLOUR_TEXT_REGION 76 401 82 401 51
STRAND 87 401 98
COLOUR_TEXT_REGION 87 401 98 401 51