SILENT_MODE
BLOCK_FILE jp_D0_qBEM.concise.blc
MAX_NSEQ 302
MAX_INPUT_LEN 304
OUTPUT_FILE jp_D0_qBEM.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 154 291   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 292 154 301 H SPACE
SUB_CHARS 1 292 154 301 E SPACE
SUB_CHARS 1 292 154 301 - SPACE
STRAND 119 295 121
COLOUR_TEXT_REGION 119 295 121 295 51
STRAND 123 295 123
COLOUR_TEXT_REGION 123 295 123 295 51
STRAND 151 295 152
COLOUR_TEXT_REGION 151 295 152 295 51
HELIX 5 295 19
COLOUR_TEXT_REGION 5 295 19 295 50
HELIX 26 295 48
COLOUR_TEXT_REGION 26 295 48 295 50
HELIX 53 295 108
COLOUR_TEXT_REGION 53 295 108 295 50
HELIX 124 295 144
COLOUR_TEXT_REGION 124 295 144 295 50
STRAND 119 300 120
COLOUR_TEXT_REGION 119 300 120 300 51
STRAND 151 300 152
COLOUR_TEXT_REGION 151 300 152 300 51
HELIX 5 300 19
COLOUR_TEXT_REGION 5 300 19 300 50
HELIX 26 300 48
COLOUR_TEXT_REGION 26 300 48 300 50
HELIX 53 300 84
COLOUR_TEXT_REGION 53 300 84 300 50
HELIX 86 300 106
COLOUR_TEXT_REGION 86 300 106 300 50
HELIX 124 300 144
COLOUR_TEXT_REGION 124 300 144 300 50
STRAND 119 301 124
COLOUR_TEXT_REGION 119 301 124 301 51
STRAND 149 301 152
COLOUR_TEXT_REGION 149 301 152 301 51
HELIX 5 301 19
COLOUR_TEXT_REGION 5 301 19 301 50
HELIX 26 301 48
COLOUR_TEXT_REGION 26 301 48 301 50
HELIX 53 301 110
COLOUR_TEXT_REGION 53 301 110 301 50
HELIX 125 301 143
COLOUR_TEXT_REGION 125 301 143 301 50