SILENT_MODE BLOCK_FILE jp_UNgdOYv.concise.blc MAX_NSEQ 813 MAX_INPUT_LEN 815 OUTPUT_FILE jp_UNgdOYv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 301 802 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 803 301 812 H SPACE SUB_CHARS 1 803 301 812 E SPACE SUB_CHARS 1 803 301 812 - SPACE STRAND 19 806 24 COLOUR_TEXT_REGION 19 806 24 806 51 STRAND 29 806 34 COLOUR_TEXT_REGION 29 806 34 806 51 STRAND 75 806 77 COLOUR_TEXT_REGION 75 806 77 806 51 STRAND 86 806 87 COLOUR_TEXT_REGION 86 806 87 806 51 STRAND 106 806 109 COLOUR_TEXT_REGION 106 806 109 806 51 STRAND 113 806 125 COLOUR_TEXT_REGION 113 806 125 806 51 STRAND 138 806 138 COLOUR_TEXT_REGION 138 806 138 806 51 STRAND 208 806 219 COLOUR_TEXT_REGION 208 806 219 806 51 STRAND 224 806 231 COLOUR_TEXT_REGION 224 806 231 806 51 STRAND 239 806 240 COLOUR_TEXT_REGION 239 806 240 806 51 HELIX 52 806 68 COLOUR_TEXT_REGION 52 806 68 806 50 HELIX 128 806 132 COLOUR_TEXT_REGION 128 806 132 806 50 HELIX 172 806 204 COLOUR_TEXT_REGION 172 806 204 806 50 HELIX 256 806 263 COLOUR_TEXT_REGION 256 806 263 806 50 HELIX 278 806 296 COLOUR_TEXT_REGION 278 806 296 806 50 STRAND 20 811 24 COLOUR_TEXT_REGION 20 811 24 811 51 STRAND 29 811 34 COLOUR_TEXT_REGION 29 811 34 811 51 STRAND 75 811 77 COLOUR_TEXT_REGION 75 811 77 811 51 STRAND 85 811 88 COLOUR_TEXT_REGION 85 811 88 811 51 STRAND 106 811 110 COLOUR_TEXT_REGION 106 811 110 811 51 STRAND 116 811 125 COLOUR_TEXT_REGION 116 811 125 811 51 STRAND 209 811 219 COLOUR_TEXT_REGION 209 811 219 811 51 STRAND 224 811 231 COLOUR_TEXT_REGION 224 811 231 811 51 HELIX 52 811 68 COLOUR_TEXT_REGION 52 811 68 811 50 HELIX 126 811 132 COLOUR_TEXT_REGION 126 811 132 811 50 HELIX 172 811 204 COLOUR_TEXT_REGION 172 811 204 811 50 HELIX 256 811 263 COLOUR_TEXT_REGION 256 811 263 811 50 HELIX 276 811 296 COLOUR_TEXT_REGION 276 811 296 811 50 STRAND 3 812 6 COLOUR_TEXT_REGION 3 812 6 812 51 STRAND 13 812 13 COLOUR_TEXT_REGION 13 812 13 812 51 STRAND 19 812 24 COLOUR_TEXT_REGION 19 812 24 812 51 STRAND 29 812 34 COLOUR_TEXT_REGION 29 812 34 812 51 STRAND 39 812 39 COLOUR_TEXT_REGION 39 812 39 812 51 STRAND 47 812 48 COLOUR_TEXT_REGION 47 812 48 812 51 STRAND 76 812 77 COLOUR_TEXT_REGION 76 812 77 812 51 STRAND 107 812 107 COLOUR_TEXT_REGION 107 812 107 812 51 STRAND 112 812 124 COLOUR_TEXT_REGION 112 812 124 812 51 STRAND 138 812 139 COLOUR_TEXT_REGION 138 812 139 812 51 STRAND 208 812 219 COLOUR_TEXT_REGION 208 812 219 812 51 STRAND 224 812 230 COLOUR_TEXT_REGION 224 812 230 812 51 STRAND 237 812 241 COLOUR_TEXT_REGION 237 812 241 812 51 HELIX 52 812 68 COLOUR_TEXT_REGION 52 812 68 812 50 HELIX 106 812 106 COLOUR_TEXT_REGION 106 812 106 812 50 HELIX 129 812 131 COLOUR_TEXT_REGION 129 812 131 812 50 HELIX 158 812 164 COLOUR_TEXT_REGION 158 812 164 812 50 HELIX 172 812 194 COLOUR_TEXT_REGION 172 812 194 812 50 HELIX 196 812 204 COLOUR_TEXT_REGION 196 812 204 812 50 HELIX 256 812 259 COLOUR_TEXT_REGION 256 812 259 812 50 HELIX 278 812 295 COLOUR_TEXT_REGION 278 812 295 812 50