SILENT_MODE
BLOCK_FILE jp_LQNfTih.concise.blc
MAX_NSEQ 271
MAX_INPUT_LEN 273
OUTPUT_FILE jp_LQNfTih.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 55 260   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 261 55 270 H SPACE
SUB_CHARS 1 261 55 270 E SPACE
SUB_CHARS 1 261 55 270 - SPACE
STRAND 11 264 12
COLOUR_TEXT_REGION 11 264 12 264 51
STRAND 17 264 19
COLOUR_TEXT_REGION 17 264 19 264 51
STRAND 24 264 28
COLOUR_TEXT_REGION 24 264 28 264 51
STRAND 33 264 37
COLOUR_TEXT_REGION 33 264 37 264 51
HELIX 43 264 53
COLOUR_TEXT_REGION 43 264 53 264 50
STRAND 11 269 12
COLOUR_TEXT_REGION 11 269 12 269 51
STRAND 17 269 19
COLOUR_TEXT_REGION 17 269 19 269 51
STRAND 24 269 28
COLOUR_TEXT_REGION 24 269 28 269 51
STRAND 33 269 37
COLOUR_TEXT_REGION 33 269 37 269 51
HELIX 43 269 53
COLOUR_TEXT_REGION 43 269 53 269 50
STRAND 4 270 5
COLOUR_TEXT_REGION 4 270 5 270 51
STRAND 11 270 12
COLOUR_TEXT_REGION 11 270 12 270 51
STRAND 17 270 20
COLOUR_TEXT_REGION 17 270 20 270 51
STRAND 24 270 28
COLOUR_TEXT_REGION 24 270 28 270 51
STRAND 33 270 36
COLOUR_TEXT_REGION 33 270 36 270 51
HELIX 43 270 53
COLOUR_TEXT_REGION 43 270 53 270 50