SILENT_MODE BLOCK_FILE jp_COaakYT.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_COaakYT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 291 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 291 15 H SPACE SUB_CHARS 1 6 291 15 E SPACE SUB_CHARS 1 6 291 15 - SPACE STRAND 77 9 82 COLOUR_TEXT_REGION 77 9 82 9 51 STRAND 100 9 105 COLOUR_TEXT_REGION 100 9 105 9 51 STRAND 126 9 131 COLOUR_TEXT_REGION 126 9 131 9 51 STRAND 153 9 156 COLOUR_TEXT_REGION 153 9 156 9 51 STRAND 209 9 211 COLOUR_TEXT_REGION 209 9 211 9 51 STRAND 231 9 235 COLOUR_TEXT_REGION 231 9 235 9 51 HELIX 14 9 24 COLOUR_TEXT_REGION 14 9 24 9 50 HELIX 26 9 27 COLOUR_TEXT_REGION 26 9 27 9 50 HELIX 31 9 40 COLOUR_TEXT_REGION 31 9 40 9 50 HELIX 48 9 60 COLOUR_TEXT_REGION 48 9 60 9 50 HELIX 87 9 92 COLOUR_TEXT_REGION 87 9 92 9 50 HELIX 106 9 106 COLOUR_TEXT_REGION 106 9 106 9 50 HELIX 109 9 115 COLOUR_TEXT_REGION 109 9 115 9 50 HELIX 138 9 147 COLOUR_TEXT_REGION 138 9 147 9 50 HELIX 166 9 174 COLOUR_TEXT_REGION 166 9 174 9 50 HELIX 183 9 191 COLOUR_TEXT_REGION 183 9 191 9 50 HELIX 198 9 205 COLOUR_TEXT_REGION 198 9 205 9 50 HELIX 223 9 230 COLOUR_TEXT_REGION 223 9 230 9 50 HELIX 239 9 267 COLOUR_TEXT_REGION 239 9 267 9 50 HELIX 272 9 289 COLOUR_TEXT_REGION 272 9 289 9 50 STRAND 77 14 82 COLOUR_TEXT_REGION 77 14 82 14 51 STRAND 89 14 89 COLOUR_TEXT_REGION 89 14 89 14 51 STRAND 92 14 92 COLOUR_TEXT_REGION 92 14 92 14 51 STRAND 101 14 105 COLOUR_TEXT_REGION 101 14 105 14 51 STRAND 126 14 130 COLOUR_TEXT_REGION 126 14 130 14 51 STRAND 153 14 156 COLOUR_TEXT_REGION 153 14 156 14 51 STRAND 208 14 211 COLOUR_TEXT_REGION 208 14 211 14 51 STRAND 223 14 226 COLOUR_TEXT_REGION 223 14 226 14 51 STRAND 231 14 235 COLOUR_TEXT_REGION 231 14 235 14 51 HELIX 15 14 23 COLOUR_TEXT_REGION 15 14 23 14 50 HELIX 27 14 27 COLOUR_TEXT_REGION 27 14 27 14 50 HELIX 31 14 39 COLOUR_TEXT_REGION 31 14 39 14 50 HELIX 48 14 60 COLOUR_TEXT_REGION 48 14 60 14 50 HELIX 87 14 88 COLOUR_TEXT_REGION 87 14 88 14 50 HELIX 90 14 91 COLOUR_TEXT_REGION 90 14 91 14 50 HELIX 106 14 115 COLOUR_TEXT_REGION 106 14 115 14 50 HELIX 139 14 147 COLOUR_TEXT_REGION 139 14 147 14 50 HELIX 168 14 174 COLOUR_TEXT_REGION 168 14 174 14 50 HELIX 183 14 191 COLOUR_TEXT_REGION 183 14 191 14 50 HELIX 198 14 205 COLOUR_TEXT_REGION 198 14 205 14 50 HELIX 227 14 230 COLOUR_TEXT_REGION 227 14 230 14 50 HELIX 239 14 267 COLOUR_TEXT_REGION 239 14 267 14 50 HELIX 273 14 289 COLOUR_TEXT_REGION 273 14 289 14 50 STRAND 6 15 7 COLOUR_TEXT_REGION 6 15 7 15 51 STRAND 59 15 61 COLOUR_TEXT_REGION 59 15 61 15 51 STRAND 65 15 66 COLOUR_TEXT_REGION 65 15 66 15 51 STRAND 77 15 82 COLOUR_TEXT_REGION 77 15 82 15 51 STRAND 100 15 105 COLOUR_TEXT_REGION 100 15 105 15 51 STRAND 125 15 131 COLOUR_TEXT_REGION 125 15 131 15 51 STRAND 153 15 156 COLOUR_TEXT_REGION 153 15 156 15 51 STRAND 230 15 235 COLOUR_TEXT_REGION 230 15 235 15 51 HELIX 14 15 27 COLOUR_TEXT_REGION 14 15 27 15 50 HELIX 30 15 40 COLOUR_TEXT_REGION 30 15 40 15 50 HELIX 48 15 58 COLOUR_TEXT_REGION 48 15 58 15 50 HELIX 76 15 76 COLOUR_TEXT_REGION 76 15 76 15 50 HELIX 86 15 93 COLOUR_TEXT_REGION 86 15 93 15 50 HELIX 109 15 115 COLOUR_TEXT_REGION 109 15 115 15 50 HELIX 138 15 147 COLOUR_TEXT_REGION 138 15 147 15 50 HELIX 165 15 174 COLOUR_TEXT_REGION 165 15 174 15 50 HELIX 182 15 191 COLOUR_TEXT_REGION 182 15 191 15 50 HELIX 198 15 205 COLOUR_TEXT_REGION 198 15 205 15 50 HELIX 223 15 229 COLOUR_TEXT_REGION 223 15 229 15 50 HELIX 239 15 269 COLOUR_TEXT_REGION 239 15 269 15 50 HELIX 271 15 289 COLOUR_TEXT_REGION 271 15 289 15 50