QUERY           : LVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQR : QUERY 
UniRef90_F1SVL0 : LVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQR : UniRef90_F1SVL0

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241-------251-------261-------271-------281------- :
OrigSeq         : LVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQR : OrigSeq

Jnet            : -------------HHHHHHHHHHH-HH---HHHHHHHHHH-------HHHHHHHHHHHHH----------------EEEEEE----HHHHHH-------EEEEEEH--HHHHHHH----------EEEEEE------HHHHHHHHHH-----EEEE---------HHHHHHHHH--------HHHHHHHHH------HHHHHHHH---EEE-----------HHHHHHHHEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-- : Jnet
jhmm            : --------------HHHHHHHHH---H---HHHHHHHHH--------HHHHHHHHHHHHH----------------EEEEEE----HHEHHE--------EEEEEHHHHHHHHHH----------EEEEE--------HHHHHHHHH-----EEEE-----------HHHHHHH--------HHHHHHHHH------HHHHHHHH--EEEE-----------EEEEHHHHEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-- : jhmm
jpssm           : -----EE------HHHHHHHHHHHHHH--HHHHHHHHHHH-------HHHHHHHHHHHEEE---EE---------HEEEEEE---HHHHHHHH------EEEEEE---HHHHHHH---------EEEEEEE------HHHHHHHHHH-----EEEE--------HHHHHHHHHH-------HHHHHHHHHH------HHHHHHHH-----------------HHHHHHHEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-- : jpssm

Lupas 14        : -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCCCCCCCCCCC-------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccccc-------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --B-B-BB-----B------BB-BB--B-BBBBBBBBB-----------BB-BB--BBBBBB-BBB-B-B----B--BBB-BB-B---B--B------BBBBBBBB-BB-BBB-BB-B----B--B-B-BB----B--BBBBBBB-BB-B-BB-BBB--B---B---B--BB--B-B-B------BB-BB----B-----BB--B-B-B--B---------BBB-BBBBBBB-B-B---BB---B-----BB--BB--B--BB--BB-B-B---BBB-B---BB--BB--- : Jnet_25
Jnet_5          : --------------------B---B------BB---B------------B------BBBB-B---B-----------BB---------------------BBBB-------B---------------------------BB-BBB------B---------------B--B--------------B--BB----------B---------------------B--BB--BB--B--------------------B---B----------------B--------------- : Jnet_5
Jnet_0          : -------------------------------------------------------------------------------------------------------B------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 841442156775306776999981134142799999987127887737898887633122257533256764310003566358637848731478884066642012177777403688877505654411688731899999862478844774367765420149999875278887414566666534788752899887426133145777777653101365403442227227899999999999999999998767764033119999999999999987289 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.