SILENT_MODE BLOCK_FILE jp_ZjTHKcq.concise.blc MAX_NSEQ 850 MAX_INPUT_LEN 852 OUTPUT_FILE jp_ZjTHKcq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 67 839 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 840 67 849 H SPACE SUB_CHARS 1 840 67 849 E SPACE SUB_CHARS 1 840 67 849 - SPACE STRAND 6 843 10 COLOUR_TEXT_REGION 6 843 10 843 51 STRAND 12 843 17 COLOUR_TEXT_REGION 12 843 17 843 51 STRAND 21 843 24 COLOUR_TEXT_REGION 21 843 24 843 51 STRAND 29 843 34 COLOUR_TEXT_REGION 29 843 34 843 51 STRAND 38 843 42 COLOUR_TEXT_REGION 38 843 42 843 51 STRAND 46 843 50 COLOUR_TEXT_REGION 46 843 50 843 51 HELIX 55 843 65 COLOUR_TEXT_REGION 55 843 65 843 50 STRAND 6 848 10 COLOUR_TEXT_REGION 6 848 10 848 51 STRAND 13 848 17 COLOUR_TEXT_REGION 13 848 17 848 51 STRAND 21 848 24 COLOUR_TEXT_REGION 21 848 24 848 51 STRAND 29 848 34 COLOUR_TEXT_REGION 29 848 34 848 51 STRAND 38 848 42 COLOUR_TEXT_REGION 38 848 42 848 51 STRAND 46 848 50 COLOUR_TEXT_REGION 46 848 50 848 51 HELIX 56 848 65 COLOUR_TEXT_REGION 56 848 65 848 50 STRAND 6 849 10 COLOUR_TEXT_REGION 6 849 10 849 51 STRAND 12 849 17 COLOUR_TEXT_REGION 12 849 17 849 51 STRAND 21 849 25 COLOUR_TEXT_REGION 21 849 25 849 51 STRAND 29 849 34 COLOUR_TEXT_REGION 29 849 34 849 51 STRAND 38 849 42 COLOUR_TEXT_REGION 38 849 42 849 51 STRAND 46 849 51 COLOUR_TEXT_REGION 46 849 51 849 51 HELIX 55 849 65 COLOUR_TEXT_REGION 55 849 65 849 50