SILENT_MODE BLOCK_FILE jp_CD7un2D.concise.blc MAX_NSEQ 116 MAX_INPUT_LEN 118 OUTPUT_FILE jp_CD7un2D.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 67 105 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 106 67 115 H SPACE SUB_CHARS 1 106 67 115 E SPACE SUB_CHARS 1 106 67 115 - SPACE STRAND 3 109 10 COLOUR_TEXT_REGION 3 109 10 109 51 STRAND 37 109 44 COLOUR_TEXT_REGION 37 109 44 109 51 STRAND 63 109 66 COLOUR_TEXT_REGION 63 109 66 109 51 HELIX 15 109 25 COLOUR_TEXT_REGION 15 109 25 109 50 HELIX 27 109 31 COLOUR_TEXT_REGION 27 109 31 109 50 HELIX 49 109 59 COLOUR_TEXT_REGION 49 109 59 109 50 STRAND 3 114 10 COLOUR_TEXT_REGION 3 114 10 114 51 STRAND 30 114 31 COLOUR_TEXT_REGION 30 114 31 114 51 STRAND 37 114 44 COLOUR_TEXT_REGION 37 114 44 114 51 STRAND 63 114 66 COLOUR_TEXT_REGION 63 114 66 114 51 HELIX 15 114 24 COLOUR_TEXT_REGION 15 114 24 114 50 HELIX 29 114 29 COLOUR_TEXT_REGION 29 114 29 114 50 HELIX 32 114 32 COLOUR_TEXT_REGION 32 114 32 114 50 HELIX 49 114 59 COLOUR_TEXT_REGION 49 114 59 114 50 STRAND 4 115 10 COLOUR_TEXT_REGION 4 115 10 115 51 STRAND 38 115 44 COLOUR_TEXT_REGION 38 115 44 115 51 STRAND 64 115 66 COLOUR_TEXT_REGION 64 115 66 115 51 HELIX 17 115 31 COLOUR_TEXT_REGION 17 115 31 115 50 HELIX 49 115 59 COLOUR_TEXT_REGION 49 115 59 115 50