SILENT_MODE
BLOCK_FILE jp_jIeoAIq.concise.blc
MAX_NSEQ 660
MAX_INPUT_LEN 662
OUTPUT_FILE jp_jIeoAIq.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 94 649   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 650 94 659 H SPACE
SUB_CHARS 1 650 94 659 E SPACE
SUB_CHARS 1 650 94 659 - SPACE
HELIX 3 653 13
COLOUR_TEXT_REGION 3 653 13 653 50
HELIX 18 653 29
COLOUR_TEXT_REGION 18 653 29 653 50
HELIX 36 653 53
COLOUR_TEXT_REGION 36 653 53 653 50
HELIX 57 653 70
COLOUR_TEXT_REGION 57 653 70 653 50
HELIX 81 653 92
COLOUR_TEXT_REGION 81 653 92 653 50
HELIX 3 658 13
COLOUR_TEXT_REGION 3 658 13 658 50
HELIX 18 658 30
COLOUR_TEXT_REGION 18 658 30 658 50
HELIX 37 658 53
COLOUR_TEXT_REGION 37 658 53 658 50
HELIX 57 658 69
COLOUR_TEXT_REGION 57 658 69 658 50
HELIX 81 658 92
COLOUR_TEXT_REGION 81 658 92 658 50
HELIX 3 659 13
COLOUR_TEXT_REGION 3 659 13 659 50
HELIX 18 659 29
COLOUR_TEXT_REGION 18 659 29 659 50
HELIX 36 659 53
COLOUR_TEXT_REGION 36 659 53 659 50
HELIX 57 659 70
COLOUR_TEXT_REGION 57 659 70 659 50
HELIX 81 659 92
COLOUR_TEXT_REGION 81 659 92 659 50