SILENT_MODE BLOCK_FILE jp_6w7xi7M.concise.blc MAX_NSEQ 546 MAX_INPUT_LEN 548 OUTPUT_FILE jp_6w7xi7M.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 114 535 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 536 114 545 H SPACE SUB_CHARS 1 536 114 545 E SPACE SUB_CHARS 1 536 114 545 - SPACE HELIX 6 539 7 COLOUR_TEXT_REGION 6 539 7 539 50 HELIX 15 539 30 COLOUR_TEXT_REGION 15 539 30 539 50 HELIX 47 539 56 COLOUR_TEXT_REGION 47 539 56 539 50 HELIX 61 539 63 COLOUR_TEXT_REGION 61 539 63 539 50 HELIX 69 539 75 COLOUR_TEXT_REGION 69 539 75 539 50 HELIX 84 539 105 COLOUR_TEXT_REGION 84 539 105 539 50 HELIX 5 544 7 COLOUR_TEXT_REGION 5 544 7 544 50 HELIX 16 544 29 COLOUR_TEXT_REGION 16 544 29 544 50 HELIX 47 544 56 COLOUR_TEXT_REGION 47 544 56 544 50 HELIX 60 544 64 COLOUR_TEXT_REGION 60 544 64 544 50 HELIX 69 544 75 COLOUR_TEXT_REGION 69 544 75 544 50 HELIX 84 544 105 COLOUR_TEXT_REGION 84 544 105 544 50 STRAND 5 545 6 COLOUR_TEXT_REGION 5 545 6 545 51 HELIX 14 545 30 COLOUR_TEXT_REGION 14 545 30 545 50 HELIX 47 545 57 COLOUR_TEXT_REGION 47 545 57 545 50 HELIX 70 545 75 COLOUR_TEXT_REGION 70 545 75 545 50 HELIX 84 545 105 COLOUR_TEXT_REGION 84 545 105 545 50