SILENT_MODE
BLOCK_FILE jp_X9Za7WU.concise.blc
MAX_NSEQ 853
MAX_INPUT_LEN 855
OUTPUT_FILE jp_X9Za7WU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 118 842   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 843 118 852 H SPACE
SUB_CHARS 1 843 118 852 E SPACE
SUB_CHARS 1 843 118 852 - SPACE
STRAND 2 846 4
COLOUR_TEXT_REGION 2 846 4 846 51
STRAND 10 846 18
COLOUR_TEXT_REGION 10 846 18 846 51
STRAND 22 846 25
COLOUR_TEXT_REGION 22 846 25 846 51
STRAND 63 846 67
COLOUR_TEXT_REGION 63 846 67 846 51
STRAND 90 846 91
COLOUR_TEXT_REGION 90 846 91 846 51
STRAND 110 846 115
COLOUR_TEXT_REGION 110 846 115 846 51
HELIX 50 846 57
COLOUR_TEXT_REGION 50 846 57 846 50
HELIX 77 846 86
COLOUR_TEXT_REGION 77 846 86 846 50
HELIX 95 846 105
COLOUR_TEXT_REGION 95 846 105 846 50
STRAND 2 851 5
COLOUR_TEXT_REGION 2 851 5 851 51
STRAND 10 851 18
COLOUR_TEXT_REGION 10 851 18 851 51
STRAND 22 851 25
COLOUR_TEXT_REGION 22 851 25 851 51
STRAND 63 851 67
COLOUR_TEXT_REGION 63 851 67 851 51
STRAND 90 851 91
COLOUR_TEXT_REGION 90 851 91 851 51
STRAND 109 851 114
COLOUR_TEXT_REGION 109 851 114 851 51
HELIX 50 851 57
COLOUR_TEXT_REGION 50 851 57 851 50
HELIX 77 851 86
COLOUR_TEXT_REGION 77 851 86 851 50
HELIX 95 851 105
COLOUR_TEXT_REGION 95 851 105 851 50
STRAND 2 852 3
COLOUR_TEXT_REGION 2 852 3 852 51
STRAND 9 852 19
COLOUR_TEXT_REGION 9 852 19 852 51
STRAND 22 852 25
COLOUR_TEXT_REGION 22 852 25 852 51
STRAND 63 852 67
COLOUR_TEXT_REGION 63 852 67 852 51
STRAND 90 852 92
COLOUR_TEXT_REGION 90 852 92 852 51
STRAND 110 852 115
COLOUR_TEXT_REGION 110 852 115 852 51
HELIX 50 852 57
COLOUR_TEXT_REGION 50 852 57 852 50
HELIX 78 852 85
COLOUR_TEXT_REGION 78 852 85 852 50
HELIX 94 852 105
COLOUR_TEXT_REGION 94 852 105 852 50