QUERY : MYAELSPGTKKVYTQVRYLDDYHWEIEGSTITGIHKKSNVKVVIDVAKNREEADSLAGKDVNGIHIVAIPDNGVFYIKNGSFVLTYRYLKATLADINDHIVWSGFKVVEDNGKLVQEDVYEYLGAALVNHIKNNALAGQDYIFWQFYKCEECGKYVDIENLEAHLREHGIKLHEKSEEHYEVFELNFREGKVFDKFGGEVPMDKFSSEAREFIKEVLS : QUERY
UniRef90_B6YTH2 : -YEELSPRIKKVYAQVRYLDDYHWKIEGDRIIGIHKKSNVRITIDVADNKEHAEKLSEKKADGIRIIAIPDKNVFYIHNGAFILTYRYLKATLADINDHIVWSGFKVVEGEGGLIQEDFYEYLGGVLVQHIKNNMLTGQDYVFWQFYKCEQCGKYVDVESLESHLKGHGIKHHEKGEEKYEVFEINFRERKVYDKYGKEVPMEKFSEEARDFLNEIMA : UniRef90_B6YTH2
UniRef90_F8AHE7 : -FKELDEKLKKVYAKVRGLDDYYWSIQDGEVRGIHKRSGMRVRIRIAEGREHADKMSREKEVGIDLIVIPGKGTFYLNNGTFIMSLKFLRPTLQDVSDHIVWSGFKVVEKDGALVQEDFYEYLGGRLIEHLKRNMIGGRDYVFWQFYRCPYCNKYVDIESLPRHMKAHGEDVKEWSEEKYEVLEINFADGKVYNKFGKEVPMEEFSEEAVDFIKESF- : UniRef90_F8AHE7
UniRef90_I3RDL6 : -FESLDEKIKKVYAKVRTIDEFHWQIDDNSIMGVHKKSGMKLQIRIAGGKEEADKLAQEKEPGIDIIVIPGKGTFYVNNGAFIMSLKFLRPTVQDIADHIVWAGFKVVEEDGKLRQEDVYDYLGGRLIEHLKQGLVNGRDYVFWPFHKCKYCGKYVDIDSLARHMKSHGEDIKEWSEEKYEILEISFVDKKVYDKFGKEVPMDKFSDEAKDFIKDSF- : UniRef90_I3RDL6
UniRef90_C5A4I0 : -YGSLSPRMKRVYTQVRYLDDYHWNIRDDAIEGIHKKSGIRVLILAADNREHALKIAGLNERGIVIIAVPEKGVFAVHNGAFVMTYKYARATLSDIHDHIVWSGFKVVENGNSLKQEDVYEYLGGRLIEHIKENAVIGQDYVFWQFYRCEKCGKYVDIDNLESHLRGHGIKLHEKSEERYEIFEINFRDGKVYDKFGEEVPLSKFSDEAKDFLRESM- : UniRef90_C5A4I0
UniRef90_C6A1R0 : -YSELNADVKRVYAKIRALDDYHWHIYEDTIIGHHRKSELPIRISVVGSKEKAEKLSQKNGPGIDIAVIPNNNTFYIKNGVFILSERFLKATLMDINDHIVWSGFRVIERDGRLVQEDTYEYLGGPLIRHLKSNMMNGQDYVFWQFYKCEKCGKYIDIESVPEHLAKHNISVAKKDSEEYEIFELNFLEGKIFNKFGEEVSQNKFAPEAQTFLKEML- : UniRef90_C6A1R0
UniRef90_I6UNP1 : -FEELNEKIKKVYGKVRTIDDFHWHISDNLIHGIHKKSGLRLEIRIAESKEAADKIAQKKEPGLMVIVVPGKETFYVNNGAFVLALKFLRSTIQDISDHIVWAGFKVVERDGALEQEDIYEYLGGRLIEHIKSGMVNGKDYIFWQFYKCEHCGKYVDIENLVRHMKTHGEDVKEWSEEKYEVLELSFEDKKVYNKFGKEVPLEEFVEETQDFIKEVF- : UniRef90_I6UNP1
UniRef90_UPI00029AC2FD : -YGSLSPRTKTVYAQVRYLDDYHWNIEGETISGIHKKSGIKVTIMTADNKEQAIKIAELKPEGIVIIAVPEKGVFSVHNGVFIMTHRYARATLSDINDHIVWRGFKVEEENGKLTQMDFYEYLGGRLIDHIKQNAVIGQDYVFWQFYKCEECGKYVDIDNLEFHLKEHGIKLQEKNEEVYEILELNFGDGKVYDKFGKEVSISAFSEETREFLEETL- : UniRef90_UPI00029AC2FD
UniRef90_F0LJK3 : -YSELDSRLRKVYSRIRTLDDYHWDLSGDKIIGRHKKSDLKIRIRVANSREEAEKLSEKEGEGLDIVVVPNKGTFYIHNGTFIMTSKFLRGTLVDINDHIVWRGFKVVEQDGKLMQEDFYEYLGGRFIEHLKNNMTIGQDFVFWQFYKCEKCGKYVDIDSVRSHLKEHGIKIEDKDEMMYEVFEISIIDGKVYDKFGKEVKEDKLSEEAKDFIKETL- : UniRef90_F0LJK3
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211----- :
OrigSeq : MYAELSPGTKKVYTQVRYLDDYHWEIEGSTITGIHKKSNVKVVIDVAKNREEADSLAGKDVNGIHIVAIPDNGVFYIKNGSFVLTYRYLKATLADINDHIVWSGFKVVEDNGKLVQEDVYEYLGAALVNHIKNNALAGQDYIFWQFYKCEECGKYVDIENLEAHLREHGIKLHEKSEEHYEVFELNFREGKVFDKFGGEVPMDKFSSEAREFIKEVLS : OrigSeq
Jnet : ------HHHHHHHHEEEE-----EEE---EEEEEEE----EEEEEE----HHHHHHH------EEEEEE----EEEEE---EHHHHHHHHHHH------EEE---EEEE----EEEEHHHHHH-HHHHHHHHHHH-----EEE-----------EEE---HHHHHHH------------EEEEEEEE---EEHHH-----------HHHHHHHHHH-- : Jnet
jhmm : ------HHHHHHHHEEEEE----EEE---EEEEEEE----EEEEEEE---HHHHHHH------EEEEEE----EEEEE--HHHHHHHHHHH--------EEE---EEEE----EEEEHHHHH---HHHHHHHHHH-----EEE-----------EEE---HHHHHHH------------EEEEEEEE---EEE-------------HHHHHHHHHH-- : jhmm
jpssm : ------HHHHHHHEEEE-----EEEE---EEEEEE-----EEEEEE---HHHHHHHH------EEEEEE----EEEEE---EEEHHHHHHHHHHHHHHHHHH---EEEE----EEEHHHHHHHHHHHHHHHHHHH------EEE----------EE----HHHHHHH----HH------EEEEEEEE----HHHHH---------HHHHHHHHHHH-- : jpssm
Lupas 14 : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21 : -------------------------------------------------------------------------------------------------------------------------------------------------------------ccccccccccccccccccccc---------------------------------------- : Lupas 21
Lupas 28 : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28
Jnet_25 : -B--B---B--BB--BBBBB-BBB-B----BBBBB----B-BBB-BB-----B--B------BBBBBBBB---BBBB-BBBBBBBB-BB-BBB--B--BBBBBBB-BB-----B----BB-BBBB-BB-BB---BB-B--BBBBBBB-B--B--BB-B--B--BB--B---B-------B-BB-BBB----BB--B---B----BB--B--BB--BB- : Jnet_25
Jnet_5 : --------B--B---B--B--B-B------B-B------B-B-B-B------B----------B-BBBB-----B------BBB----B---B--B---BB-----B-----------B---B---BB--B----------BBB-B--B--B--------B---B----------------B--B------B----------------B---B----- : Jnet_5
Jnet_0 : -----------------------------------------------------------------BBB--------------B----------------------------------------------------------B---------------------------------------------------------------------------- : Jnet_0
Jnet Rel : 99987434443212234115631786486589986168855898740862788887516888458998558846986067001325787643212342023336558744785464168888121999999985124577034014545667642315426888875155121367740368888621661012011456766640899999987449 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.