SILENT_MODE BLOCK_FILE jp_t5ZdoJc.concise.blc MAX_NSEQ 723 MAX_INPUT_LEN 725 OUTPUT_FILE jp_t5ZdoJc.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 104 712 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 713 104 722 H SPACE SUB_CHARS 1 713 104 722 E SPACE SUB_CHARS 1 713 104 722 - SPACE STRAND 0 716 4 COLOUR_TEXT_REGION 0 716 4 716 51 STRAND 20 716 23 COLOUR_TEXT_REGION 20 716 23 716 51 STRAND 43 716 48 COLOUR_TEXT_REGION 43 716 48 716 51 STRAND 69 716 74 COLOUR_TEXT_REGION 69 716 74 716 51 HELIX 8 716 15 COLOUR_TEXT_REGION 8 716 15 716 50 HELIX 26 716 38 COLOUR_TEXT_REGION 26 716 38 716 50 HELIX 49 716 64 COLOUR_TEXT_REGION 49 716 64 716 50 HELIX 86 716 98 COLOUR_TEXT_REGION 86 716 98 716 50 STRAND 0 721 4 COLOUR_TEXT_REGION 0 721 4 721 51 STRAND 20 721 23 COLOUR_TEXT_REGION 20 721 23 721 51 STRAND 43 721 47 COLOUR_TEXT_REGION 43 721 47 721 51 STRAND 69 721 74 COLOUR_TEXT_REGION 69 721 74 721 51 HELIX 8 721 15 COLOUR_TEXT_REGION 8 721 15 721 50 HELIX 26 721 38 COLOUR_TEXT_REGION 26 721 38 721 50 HELIX 49 721 64 COLOUR_TEXT_REGION 49 721 64 721 50 HELIX 86 721 98 COLOUR_TEXT_REGION 86 721 98 721 50 STRAND 0 722 4 COLOUR_TEXT_REGION 0 722 4 722 51 STRAND 20 722 22 COLOUR_TEXT_REGION 20 722 22 722 51 STRAND 43 722 48 COLOUR_TEXT_REGION 43 722 48 722 51 STRAND 69 722 74 COLOUR_TEXT_REGION 69 722 74 722 51 HELIX 9 722 15 COLOUR_TEXT_REGION 9 722 15 722 50 HELIX 26 722 38 COLOUR_TEXT_REGION 26 722 38 722 50 HELIX 49 722 64 COLOUR_TEXT_REGION 49 722 64 722 50 HELIX 86 722 98 COLOUR_TEXT_REGION 86 722 98 722 50