SILENT_MODE BLOCK_FILE jp_BvStGh2.concise.blc MAX_NSEQ 98 MAX_INPUT_LEN 100 OUTPUT_FILE jp_BvStGh2.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 162 87 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 88 162 97 H SPACE SUB_CHARS 1 88 162 97 E SPACE SUB_CHARS 1 88 162 97 - SPACE STRAND 17 91 25 COLOUR_TEXT_REGION 17 91 25 91 51 STRAND 39 91 43 COLOUR_TEXT_REGION 39 91 43 91 51 STRAND 66 91 72 COLOUR_TEXT_REGION 66 91 72 91 51 STRAND 78 91 78 COLOUR_TEXT_REGION 78 91 78 91 51 STRAND 90 91 91 COLOUR_TEXT_REGION 90 91 91 91 51 STRAND 104 91 109 COLOUR_TEXT_REGION 104 91 109 91 51 STRAND 115 91 116 COLOUR_TEXT_REGION 115 91 116 91 51 STRAND 151 91 156 COLOUR_TEXT_REGION 151 91 156 91 51 HELIX 49 91 61 COLOUR_TEXT_REGION 49 91 61 91 50 HELIX 76 91 77 COLOUR_TEXT_REGION 76 91 77 91 50 HELIX 79 91 79 COLOUR_TEXT_REGION 79 91 79 91 50 HELIX 96 91 97 COLOUR_TEXT_REGION 96 91 97 91 50 HELIX 117 91 119 COLOUR_TEXT_REGION 117 91 119 91 50 HELIX 122 91 127 COLOUR_TEXT_REGION 122 91 127 91 50 HELIX 139 91 146 COLOUR_TEXT_REGION 139 91 146 91 50 STRAND 17 96 25 COLOUR_TEXT_REGION 17 96 25 96 51 STRAND 39 96 43 COLOUR_TEXT_REGION 39 96 43 96 51 STRAND 66 96 71 COLOUR_TEXT_REGION 66 96 71 96 51 STRAND 89 96 91 COLOUR_TEXT_REGION 89 96 91 96 51 STRAND 105 96 109 COLOUR_TEXT_REGION 105 96 109 96 51 STRAND 151 96 156 COLOUR_TEXT_REGION 151 96 156 96 51 HELIX 49 96 61 COLOUR_TEXT_REGION 49 96 61 96 50 HELIX 76 96 80 COLOUR_TEXT_REGION 76 96 80 96 50 HELIX 96 96 99 COLOUR_TEXT_REGION 96 96 99 96 50 HELIX 115 96 119 COLOUR_TEXT_REGION 115 96 119 96 50 HELIX 123 96 126 COLOUR_TEXT_REGION 123 96 126 96 50 HELIX 139 96 146 COLOUR_TEXT_REGION 139 96 146 96 50 STRAND 18 97 25 COLOUR_TEXT_REGION 18 97 25 97 51 STRAND 39 97 43 COLOUR_TEXT_REGION 39 97 43 97 51 STRAND 66 97 72 COLOUR_TEXT_REGION 66 97 72 97 51 STRAND 76 97 79 COLOUR_TEXT_REGION 76 97 79 97 51 STRAND 104 97 110 COLOUR_TEXT_REGION 104 97 110 97 51 STRAND 115 97 118 COLOUR_TEXT_REGION 115 97 118 97 51 STRAND 138 97 139 COLOUR_TEXT_REGION 138 97 139 97 51 STRAND 151 97 157 COLOUR_TEXT_REGION 151 97 157 97 51 HELIX 49 97 61 COLOUR_TEXT_REGION 49 97 61 97 50 HELIX 122 97 128 COLOUR_TEXT_REGION 122 97 128 97 50 HELIX 137 97 137 COLOUR_TEXT_REGION 137 97 137 97 50 HELIX 140 97 146 COLOUR_TEXT_REGION 140 97 146 97 50