SILENT_MODE
BLOCK_FILE jp_cB5VWBe.concise.blc
MAX_NSEQ 879
MAX_INPUT_LEN 881
OUTPUT_FILE jp_cB5VWBe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 868   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 869 144 878 H SPACE
SUB_CHARS 1 869 144 878 E SPACE
SUB_CHARS 1 869 144 878 - SPACE
STRAND 91 872 96
COLOUR_TEXT_REGION 91 872 96 872 51
STRAND 100 872 105
COLOUR_TEXT_REGION 100 872 105 872 51
STRAND 125 872 130
COLOUR_TEXT_REGION 125 872 130 872 51
HELIX 7 872 17
COLOUR_TEXT_REGION 7 872 17 872 50
HELIX 22 872 31
COLOUR_TEXT_REGION 22 872 31 872 50
HELIX 36 872 42
COLOUR_TEXT_REGION 36 872 42 872 50
HELIX 48 872 59
COLOUR_TEXT_REGION 48 872 59 872 50
HELIX 77 872 77
COLOUR_TEXT_REGION 77 872 77 872 50
HELIX 83 872 88
COLOUR_TEXT_REGION 83 872 88 872 50
HELIX 111 872 120
COLOUR_TEXT_REGION 111 872 120 872 50
HELIX 132 872 142
COLOUR_TEXT_REGION 132 872 142 872 50
STRAND 91 877 97
COLOUR_TEXT_REGION 91 877 97 877 51
STRAND 100 877 106
COLOUR_TEXT_REGION 100 877 106 877 51
STRAND 125 877 130
COLOUR_TEXT_REGION 125 877 130 877 51
HELIX 7 877 17
COLOUR_TEXT_REGION 7 877 17 877 50
HELIX 22 877 31
COLOUR_TEXT_REGION 22 877 31 877 50
HELIX 36 877 42
COLOUR_TEXT_REGION 36 877 42 877 50
HELIX 48 877 59
COLOUR_TEXT_REGION 48 877 59 877 50
HELIX 75 877 78
COLOUR_TEXT_REGION 75 877 78 877 50
HELIX 83 877 88
COLOUR_TEXT_REGION 83 877 88 877 50
HELIX 111 877 120
COLOUR_TEXT_REGION 111 877 120 877 50
HELIX 132 877 142
COLOUR_TEXT_REGION 132 877 142 877 50
STRAND 90 878 96
COLOUR_TEXT_REGION 90 878 96 878 51
STRAND 100 878 105
COLOUR_TEXT_REGION 100 878 105 878 51
STRAND 125 878 129
COLOUR_TEXT_REGION 125 878 129 878 51
HELIX 6 878 16
COLOUR_TEXT_REGION 6 878 16 878 50
HELIX 22 878 31
COLOUR_TEXT_REGION 22 878 31 878 50
HELIX 36 878 42
COLOUR_TEXT_REGION 36 878 42 878 50
HELIX 48 878 58
COLOUR_TEXT_REGION 48 878 58 878 50
HELIX 83 878 89
COLOUR_TEXT_REGION 83 878 89 878 50
HELIX 111 878 121
COLOUR_TEXT_REGION 111 878 121 878 50
HELIX 132 878 142
COLOUR_TEXT_REGION 132 878 142 878 50