SILENT_MODE
BLOCK_FILE jp_RwQpHRY.concise.blc
MAX_NSEQ 591
MAX_INPUT_LEN 593
OUTPUT_FILE jp_RwQpHRY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 85 580   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 581 85 590 H SPACE
SUB_CHARS 1 581 85 590 E SPACE
SUB_CHARS 1 581 85 590 - SPACE
STRAND 4 584 11
COLOUR_TEXT_REGION 4 584 11 584 51
STRAND 17 584 22
COLOUR_TEXT_REGION 17 584 22 584 51
STRAND 34 584 41
COLOUR_TEXT_REGION 34 584 41 584 51
STRAND 44 584 52
COLOUR_TEXT_REGION 44 584 52 584 51
STRAND 57 584 62
COLOUR_TEXT_REGION 57 584 62 584 51
STRAND 77 584 84
COLOUR_TEXT_REGION 77 584 84 584 51
HELIX 26 584 29
COLOUR_TEXT_REGION 26 584 29 584 50
HELIX 64 584 70
COLOUR_TEXT_REGION 64 584 70 584 50
STRAND 3 589 11
COLOUR_TEXT_REGION 3 589 11 589 51
STRAND 17 589 22
COLOUR_TEXT_REGION 17 589 22 589 51
STRAND 35 589 41
COLOUR_TEXT_REGION 35 589 41 589 51
STRAND 44 589 52
COLOUR_TEXT_REGION 44 589 52 589 51
STRAND 57 589 62
COLOUR_TEXT_REGION 57 589 62 589 51
STRAND 77 589 83
COLOUR_TEXT_REGION 77 589 83 589 51
HELIX 26 589 29
COLOUR_TEXT_REGION 26 589 29 589 50
HELIX 64 589 70
COLOUR_TEXT_REGION 64 589 70 589 50
STRAND 4 590 11
COLOUR_TEXT_REGION 4 590 11 590 51
STRAND 17 590 22
COLOUR_TEXT_REGION 17 590 22 590 51
STRAND 34 590 41
COLOUR_TEXT_REGION 34 590 41 590 51
STRAND 44 590 52
COLOUR_TEXT_REGION 44 590 52 590 51
STRAND 57 590 61
COLOUR_TEXT_REGION 57 590 61 590 51
STRAND 77 590 84
COLOUR_TEXT_REGION 77 590 84 590 51
HELIX 25 590 29
COLOUR_TEXT_REGION 25 590 29 590 50
HELIX 64 590 70
COLOUR_TEXT_REGION 64 590 70 590 50