SILENT_MODE
BLOCK_FILE jp_Sz1b7G8.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_Sz1b7G8.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 80 9   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 10 80 19 H SPACE
SUB_CHARS 1 10 80 19 E SPACE
SUB_CHARS 1 10 80 19 - SPACE
STRAND 27 13 30
COLOUR_TEXT_REGION 27 13 30 13 51
STRAND 57 13 59
COLOUR_TEXT_REGION 57 13 59 13 51
STRAND 67 13 72
COLOUR_TEXT_REGION 67 13 72 13 51
STRAND 76 13 79
COLOUR_TEXT_REGION 76 13 79 13 51
HELIX 5 13 13
COLOUR_TEXT_REGION 5 13 13 13 50
HELIX 16 13 20
COLOUR_TEXT_REGION 16 13 20 13 50
HELIX 36 13 48
COLOUR_TEXT_REGION 36 13 48 13 50
HELIX 60 13 62
COLOUR_TEXT_REGION 60 13 62 13 50
STRAND 5 18 6
COLOUR_TEXT_REGION 5 18 6 18 51
STRAND 9 18 9
COLOUR_TEXT_REGION 9 18 9 18 51
STRAND 27 18 30
COLOUR_TEXT_REGION 27 18 30 18 51
STRAND 57 18 61
COLOUR_TEXT_REGION 57 18 61 18 51
STRAND 67 18 72
COLOUR_TEXT_REGION 67 18 72 18 51
STRAND 76 18 79
COLOUR_TEXT_REGION 76 18 79 18 51
HELIX 8 18 8
COLOUR_TEXT_REGION 8 18 8 18 50
HELIX 10 18 13
COLOUR_TEXT_REGION 10 18 13 18 50
HELIX 16 18 21
COLOUR_TEXT_REGION 16 18 21 18 50
HELIX 36 18 48
COLOUR_TEXT_REGION 36 18 48 18 50
STRAND 26 19 31
COLOUR_TEXT_REGION 26 19 31 19 51
STRAND 67 19 71
COLOUR_TEXT_REGION 67 19 71 19 51
STRAND 77 19 79
COLOUR_TEXT_REGION 77 19 79 19 51
HELIX 4 19 14
COLOUR_TEXT_REGION 4 19 14 19 50
HELIX 16 19 20
COLOUR_TEXT_REGION 16 19 20 19 50
HELIX 36 19 47
COLOUR_TEXT_REGION 36 19 47 19 50
HELIX 57 19 62
COLOUR_TEXT_REGION 57 19 62 19 50