QUERY                  : RLAELDGVLMQYLLEADLLRELPPTYRLVLLPLDEPEVAAQALAWAMEAPNPEGWPSVYALFLQGRPIRLLLLGKEVEVA : QUERY 
UniRef90_UPI000362A9B8 : RMQELYGRVHGVLLDLELAGRLPESYRLVILPLDEPGVAAYALA-VAQAPNPENLPLVHALFWKGELQTLLLPGGE---- : UniRef90_UPI000362A9B8
UniRef90_R4JCL8        : RLGELEGVFRERLLDPELLASLPERFVLVVMPLDEPEAMRVALEGLSRARTWEGGPLVYALFQGGGLLALVLPEGRL--- : UniRef90_R4JCL8
UniRef90_B7AC56        : RLAELDAILTEELLEKGLLGELPEAYRLVPLPLDEPEVAQKALLWAHEAPNPEGWPLVYALFLGGRPLRLLLPEREV--- : UniRef90_B7AC56
UniRef90_Q5SGM4        : RIGRLHGLFVEHLLDPGLREALPHPFVLVALDPSDPELMAYALEAAKRSAGE--GPMVYALFQGEELRLIIAPEGPI--- : UniRef90_Q5SGM4
UniRef90_UPI00035CE651 : -----DAFGMCFLEDPELFELLPERFVLHVLPLDDEEAGQVALAELPHLRKWSAYGLTQALFLGGRLVGVVLPEGKV--- : UniRef90_UPI00035CE651

                       : 1---------11--------21--------31--------41--------51--------61--------71-------- :
OrigSeq                : RLAELDGVLMQYLLEADLLRELPPTYRLVLLPLDEPEVAAQALAWAMEAPNPEGWPSVYALFLQGRPIRLLLLGKEVEVA : OrigSeq

Jnet                   : ----HHHHHHHHH--HHHHH------EEEE-----HHHHHHHHHHHHH--------EEEHHH----EEEEEE---EEEE- : Jnet
jhmm                   : ----EE-HEHHHH--HHHHHH-----EEEE-----HHHHHHHHHHHHH--------EEEEE-----EEEEEE---EEEE- : jhmm
jpssm                  : ---HHHHHHHHHHH-HHHHH-----EEEEEE----HHHHHHHHHHHH---------HHHHHH----EEEEE-----EEE- : jpssm

Lupas 14               : -------------------------------------------------------------------------------- : Lupas 14
Lupas 21               : -ccccccccccccccccccccc---------------------------------------------------------- : Lupas 21
Lupas 28               : -------------------------------------------------------------------------------- : Lupas 28

Jnet_25                : ----B-BBBB-BBB---BB--BB--BBBBBBBB----BB--BB--B--B----BBBBBBBBBB---BB-BBBB---B--- : Jnet_25
Jnet_5                 : ----B---B---B------------B-BBBB------B---BB--B----------BBBBBB-------BBB-------- : Jnet_5
Jnet_0                 : -----------------------------------------B---------------B-----------B---------- : Jnet_0
Jnet Rel               : 98213349499861067651066311456612786178999999985267888764221120268525453177715726 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.