SILENT_MODE
BLOCK_FILE jp_u6wYuli.concise.blc
MAX_NSEQ 837
MAX_INPUT_LEN 839
OUTPUT_FILE jp_u6wYuli.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 168 826   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 827 168 836 H SPACE
SUB_CHARS 1 827 168 836 E SPACE
SUB_CHARS 1 827 168 836 - SPACE
STRAND 3 830 8
COLOUR_TEXT_REGION 3 830 8 830 51
STRAND 115 830 119
COLOUR_TEXT_REGION 115 830 119 830 51
STRAND 126 830 130
COLOUR_TEXT_REGION 126 830 130 830 51
STRAND 156 830 162
COLOUR_TEXT_REGION 156 830 162 830 51
HELIX 17 830 30
COLOUR_TEXT_REGION 17 830 30 830 50
HELIX 40 830 42
COLOUR_TEXT_REGION 40 830 42 830 50
HELIX 48 830 73
COLOUR_TEXT_REGION 48 830 73 830 50
HELIX 76 830 92
COLOUR_TEXT_REGION 76 830 92 830 50
HELIX 99 830 111
COLOUR_TEXT_REGION 99 830 111 830 50
HELIX 135 830 150
COLOUR_TEXT_REGION 135 830 150 830 50
STRAND 3 835 8
COLOUR_TEXT_REGION 3 835 8 835 51
STRAND 115 835 119
COLOUR_TEXT_REGION 115 835 119 835 51
STRAND 126 835 130
COLOUR_TEXT_REGION 126 835 130 835 51
STRAND 157 835 162
COLOUR_TEXT_REGION 157 835 162 835 51
HELIX 17 835 30
COLOUR_TEXT_REGION 17 835 30 835 50
HELIX 40 835 45
COLOUR_TEXT_REGION 40 835 45 835 50
HELIX 48 835 73
COLOUR_TEXT_REGION 48 835 73 835 50
HELIX 76 835 93
COLOUR_TEXT_REGION 76 835 93 835 50
HELIX 98 835 110
COLOUR_TEXT_REGION 98 835 110 835 50
HELIX 135 835 149
COLOUR_TEXT_REGION 135 835 149 835 50
STRAND 3 836 8
COLOUR_TEXT_REGION 3 836 8 836 51
STRAND 116 836 118
COLOUR_TEXT_REGION 116 836 118 836 51
STRAND 126 836 130
COLOUR_TEXT_REGION 126 836 130 836 51
STRAND 156 836 162
COLOUR_TEXT_REGION 156 836 162 836 51
HELIX 17 836 30
COLOUR_TEXT_REGION 17 836 30 836 50
HELIX 48 836 86
COLOUR_TEXT_REGION 48 836 86 836 50
HELIX 100 836 111
COLOUR_TEXT_REGION 100 836 111 836 50
HELIX 136 836 150
COLOUR_TEXT_REGION 136 836 150 836 50