SILENT_MODE
BLOCK_FILE jp_MnySF77.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_MnySF77.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 70 7   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 8 70 17 H SPACE
SUB_CHARS 1 8 70 17 E SPACE
SUB_CHARS 1 8 70 17 - SPACE
STRAND 42 11 47
COLOUR_TEXT_REGION 42 11 47 11 51
STRAND 53 11 56
COLOUR_TEXT_REGION 53 11 56 11 51
STRAND 61 11 63
COLOUR_TEXT_REGION 61 11 63 11 51
HELIX 3 11 16
COLOUR_TEXT_REGION 3 11 16 11 50
HELIX 24 11 39
COLOUR_TEXT_REGION 24 11 39 11 50
STRAND 42 16 47
COLOUR_TEXT_REGION 42 16 47 16 51
STRAND 54 16 55
COLOUR_TEXT_REGION 54 16 55 16 51
STRAND 61 16 64
COLOUR_TEXT_REGION 61 16 64 16 51
HELIX 2 16 16
COLOUR_TEXT_REGION 2 16 16 16 50
HELIX 25 16 39
COLOUR_TEXT_REGION 25 16 39 16 50
STRAND 8 17 15
COLOUR_TEXT_REGION 8 17 15 17 51
STRAND 42 17 47
COLOUR_TEXT_REGION 42 17 47 17 51
STRAND 52 17 56
COLOUR_TEXT_REGION 52 17 56 17 51
STRAND 61 17 63
COLOUR_TEXT_REGION 61 17 63 17 51
HELIX 6 17 7
COLOUR_TEXT_REGION 6 17 7 17 50
HELIX 23 17 41
COLOUR_TEXT_REGION 23 17 41 17 50