QUERY           : AGYLNNIALNLEIVLKNKADSPEVSETLVTRICENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELP : QUERY 
UniRef90_F4E3X1 : AGYLNNVSLHLEIVLKNKAKNEEVSQSLAERLCEKLMVAREVCFLQADGTVEKFKLNDIDYEISNTEEI- : UniRef90_F4E3X1
UniRef90_E5W3D1 : --YLNNCSLQIDTIIENAASSTEYSRNKAELILEKLMEAYKVVFVKVDGETEEFEICNLEYEVENTEE-- : UniRef90_E5W3D1
UniRef90_M5PAC9 : --YLNNCLLQIDTFIENSADSVKSSKNKAEFLLEKLQEAYKIVFINIDGEAEEFDICNLEYEVEDTEEW- : UniRef90_M5PAC9

                : 1---------11--------21--------31--------41--------51--------61-------- :
OrigSeq         : AGYLNNIALNLEIVLKNKADSPEVSETLVTRICENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELP : OrigSeq

Jnet            : --HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH--EEEEEE-----EEEE----EEE------- : Jnet
jhmm            : -HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH--EEEEEE------EE-----EEEE------ : jhmm
jpssm           : -----HHEEEEEEEE-------HHHHHHHHHHHHHHHHHHHEEEEEE----EEEEE----EEE------- : jpssm

Lupas 14        : ---------------------------------------------------------------------- : Lupas 14
Lupas 21        : ---------------------------------------------------------------------- : Lupas 21
Lupas 28        : ---------------------------------------------------------------------- : Lupas 28

Jnet_25         : --BBB-B-B-B-BBB-B-B----BB--BB-BBB--BB-BB-BBBB-B-B-B--B-BB-B-B-B------- : Jnet_25
Jnet_5          : ------B-B-B--BB-------------B--BB--B-----BBBB------------------------- : Jnet_5
Jnet_0          : ----------------------------B--B------------B------------------------- : Jnet_0
Jnet Rel        : 9313300322333331678764215868999999987643324687167733287147605750678899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.