SILENT_MODE BLOCK_FILE jp_4DUpVuo.concise.blc MAX_NSEQ 735 MAX_INPUT_LEN 737 OUTPUT_FILE jp_4DUpVuo.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 118 724 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 725 118 734 H SPACE SUB_CHARS 1 725 118 734 E SPACE SUB_CHARS 1 725 118 734 - SPACE STRAND 42 728 46 COLOUR_TEXT_REGION 42 728 46 728 51 STRAND 68 728 72 COLOUR_TEXT_REGION 68 728 72 728 51 STRAND 81 728 86 COLOUR_TEXT_REGION 81 728 86 728 51 STRAND 90 728 94 COLOUR_TEXT_REGION 90 728 94 728 51 HELIX 2 728 15 COLOUR_TEXT_REGION 2 728 15 728 50 HELIX 21 728 36 COLOUR_TEXT_REGION 21 728 36 728 50 HELIX 50 728 64 COLOUR_TEXT_REGION 50 728 64 728 50 HELIX 96 728 115 COLOUR_TEXT_REGION 96 728 115 728 50 STRAND 42 733 46 COLOUR_TEXT_REGION 42 733 46 733 51 STRAND 68 733 72 COLOUR_TEXT_REGION 68 733 72 733 51 STRAND 81 733 86 COLOUR_TEXT_REGION 81 733 86 733 51 STRAND 90 733 94 COLOUR_TEXT_REGION 90 733 94 733 51 HELIX 2 733 15 COLOUR_TEXT_REGION 2 733 15 733 50 HELIX 21 733 36 COLOUR_TEXT_REGION 21 733 36 733 50 HELIX 50 733 64 COLOUR_TEXT_REGION 50 733 64 733 50 HELIX 96 733 116 COLOUR_TEXT_REGION 96 733 116 733 50 STRAND 42 734 46 COLOUR_TEXT_REGION 42 734 46 734 51 STRAND 69 734 73 COLOUR_TEXT_REGION 69 734 73 734 51 STRAND 82 734 86 COLOUR_TEXT_REGION 82 734 86 734 51 STRAND 90 734 95 COLOUR_TEXT_REGION 90 734 95 734 51 HELIX 2 734 15 COLOUR_TEXT_REGION 2 734 15 734 50 HELIX 22 734 36 COLOUR_TEXT_REGION 22 734 36 734 50 HELIX 50 734 64 COLOUR_TEXT_REGION 50 734 64 734 50 HELIX 97 734 115 COLOUR_TEXT_REGION 97 734 115 734 50