SILENT_MODE BLOCK_FILE jp_CZqau7d.concise.blc MAX_NSEQ 1113 MAX_INPUT_LEN 1115 OUTPUT_FILE jp_CZqau7d.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 80 1102 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1103 80 1112 H SPACE SUB_CHARS 1 1103 80 1112 E SPACE SUB_CHARS 1 1103 80 1112 - SPACE STRAND 17 1106 21 COLOUR_TEXT_REGION 17 1106 21 1106 51 STRAND 26 1106 31 COLOUR_TEXT_REGION 26 1106 31 1106 51 STRAND 37 1106 39 COLOUR_TEXT_REGION 37 1106 39 1106 51 STRAND 75 1106 78 COLOUR_TEXT_REGION 75 1106 78 1106 51 HELIX 3 1106 16 COLOUR_TEXT_REGION 3 1106 16 1106 50 HELIX 44 1106 64 COLOUR_TEXT_REGION 44 1106 64 1106 50 STRAND 17 1111 21 COLOUR_TEXT_REGION 17 1111 21 1111 51 STRAND 26 1111 31 COLOUR_TEXT_REGION 26 1111 31 1111 51 STRAND 37 1111 39 COLOUR_TEXT_REGION 37 1111 39 1111 51 STRAND 76 1111 78 COLOUR_TEXT_REGION 76 1111 78 1111 51 HELIX 3 1111 16 COLOUR_TEXT_REGION 3 1111 16 1111 50 HELIX 44 1111 64 COLOUR_TEXT_REGION 44 1111 64 1111 50 STRAND 17 1112 20 COLOUR_TEXT_REGION 17 1112 20 1112 51 STRAND 26 1112 31 COLOUR_TEXT_REGION 26 1112 31 1112 51 STRAND 37 1112 39 COLOUR_TEXT_REGION 37 1112 39 1112 51 STRAND 75 1112 78 COLOUR_TEXT_REGION 75 1112 78 1112 51 HELIX 3 1112 16 COLOUR_TEXT_REGION 3 1112 16 1112 50 HELIX 44 1112 64 COLOUR_TEXT_REGION 44 1112 64 1112 50