SILENT_MODE BLOCK_FILE jp_VcdrD3Z.concise.blc MAX_NSEQ 560 MAX_INPUT_LEN 562 OUTPUT_FILE jp_VcdrD3Z.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 549 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 550 165 559 H SPACE SUB_CHARS 1 550 165 559 E SPACE SUB_CHARS 1 550 165 559 - SPACE HELIX 3 553 9 COLOUR_TEXT_REGION 3 553 9 553 50 HELIX 18 553 23 COLOUR_TEXT_REGION 18 553 23 553 50 HELIX 28 553 51 COLOUR_TEXT_REGION 28 553 51 553 50 HELIX 63 553 78 COLOUR_TEXT_REGION 63 553 78 553 50 HELIX 88 553 104 COLOUR_TEXT_REGION 88 553 104 553 50 HELIX 109 553 122 COLOUR_TEXT_REGION 109 553 122 553 50 HELIX 131 553 157 COLOUR_TEXT_REGION 131 553 157 553 50 HELIX 3 558 9 COLOUR_TEXT_REGION 3 558 9 558 50 HELIX 18 558 23 COLOUR_TEXT_REGION 18 558 23 558 50 HELIX 28 558 51 COLOUR_TEXT_REGION 28 558 51 558 50 HELIX 63 558 78 COLOUR_TEXT_REGION 63 558 78 558 50 HELIX 88 558 105 COLOUR_TEXT_REGION 88 558 105 558 50 HELIX 108 558 122 COLOUR_TEXT_REGION 108 558 122 558 50 HELIX 131 558 144 COLOUR_TEXT_REGION 131 558 144 558 50 HELIX 147 558 157 COLOUR_TEXT_REGION 147 558 157 558 50 STRAND 155 559 157 COLOUR_TEXT_REGION 155 559 157 559 51 HELIX 3 559 9 COLOUR_TEXT_REGION 3 559 9 559 50 HELIX 18 559 23 COLOUR_TEXT_REGION 18 559 23 559 50 HELIX 29 559 51 COLOUR_TEXT_REGION 29 559 51 559 50 HELIX 62 559 78 COLOUR_TEXT_REGION 62 559 78 559 50 HELIX 88 559 104 COLOUR_TEXT_REGION 88 559 104 559 50 HELIX 109 559 122 COLOUR_TEXT_REGION 109 559 122 559 50 HELIX 131 559 154 COLOUR_TEXT_REGION 131 559 154 559 50