SILENT_MODE BLOCK_FILE jp_ccvzs_B.concise.blc MAX_NSEQ 691 MAX_INPUT_LEN 693 OUTPUT_FILE jp_ccvzs_B.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 71 680 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 681 71 690 H SPACE SUB_CHARS 1 681 71 690 E SPACE SUB_CHARS 1 681 71 690 - SPACE STRAND 6 684 9 COLOUR_TEXT_REGION 6 684 9 684 51 STRAND 14 684 22 COLOUR_TEXT_REGION 14 684 22 684 51 STRAND 29 684 35 COLOUR_TEXT_REGION 29 684 35 684 51 STRAND 44 684 54 COLOUR_TEXT_REGION 44 684 54 684 51 STRAND 59 684 62 COLOUR_TEXT_REGION 59 684 62 684 51 STRAND 68 684 69 COLOUR_TEXT_REGION 68 684 69 684 51 STRAND 6 689 9 COLOUR_TEXT_REGION 6 689 9 689 51 STRAND 14 689 22 COLOUR_TEXT_REGION 14 689 22 689 51 STRAND 29 689 35 COLOUR_TEXT_REGION 29 689 35 689 51 STRAND 45 689 46 COLOUR_TEXT_REGION 45 689 46 689 51 STRAND 49 689 53 COLOUR_TEXT_REGION 49 689 53 689 51 STRAND 59 689 62 COLOUR_TEXT_REGION 59 689 62 689 51 STRAND 6 690 9 COLOUR_TEXT_REGION 6 690 9 690 51 STRAND 14 690 22 COLOUR_TEXT_REGION 14 690 22 690 51 STRAND 29 690 36 COLOUR_TEXT_REGION 29 690 36 690 51 STRAND 44 690 54 COLOUR_TEXT_REGION 44 690 54 690 51 STRAND 59 690 62 COLOUR_TEXT_REGION 59 690 62 690 51 STRAND 67 690 69 COLOUR_TEXT_REGION 67 690 69 690 51